Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30064
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   100   2e-21
Z73426-6|CAA97796.2|  853|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z73425-9|CAA97791.2|  853|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF077529-1|AAC26253.1|  690|Caenorhabditis elegans Hypothetical ...    28   6.0  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 46/61 (75%), Positives = 54/61 (88%)
 Frame = +2

Query: 8   RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 187
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 188 E 190
           E
Sbjct: 63  E 63


>Z73426-6|CAA97796.2|  853|Caenorhabditis elegans Hypothetical
           protein F12F6.1 protein.
          Length = 853

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 467 RPKSAKSLINQKNRRDRVECCSSLEQESTIKERGLQRQRAKN 592
           +PK   S  +  NRR  V+     EQE T    G Q +R  N
Sbjct: 281 KPKPTTSSSSSSNRRQVVDTSDGAEQEYTFGTNGTQGKRIVN 322


>Z73425-9|CAA97791.2|  853|Caenorhabditis elegans Hypothetical
           protein F12F6.1 protein.
          Length = 853

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 467 RPKSAKSLINQKNRRDRVECCSSLEQESTIKERGLQRQRAKN 592
           +PK   S  +  NRR  V+     EQE T    G Q +R  N
Sbjct: 281 KPKPTTSSSSSSNRRQVVDTSDGAEQEYTFGTNGTQGKRIVN 322


>AF077529-1|AAC26253.1|  690|Caenorhabditis elegans Hypothetical
           protein C09E8.3 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 35  YVTPRRP--FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEGGPGTQ 208
           +V PR+P   ++A ++ E   I +  L  K+E   ++  L  +RKA +  L L G   T 
Sbjct: 251 FVDPRKPVALKQAEMEDENNEIAK--LMRKKEADEIRVPLKFLRKAVKTALMLGGQNVTD 308

Query: 209 F 211
           F
Sbjct: 309 F 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,589,370
Number of Sequences: 27780
Number of extensions: 348896
Number of successful extensions: 759
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)