Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30064
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.9  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   9.1  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   9.1  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 81  SWSRRAFSKGRRGVTYVFENTDGTL 7
           S++  + S  +  +TYV++N +GTL
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTL 225


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 81  SWSRRAFSKGRRGVTYVFENTDGTL 7
           S++  + S  +  +TYV++N +GTL
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTL 225


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 81  SWSRRAFSKGRRGVTYVFENTDGTL 7
           S++  + S  +  +TYV++N +GTL
Sbjct: 252 SFAIESISYEQTAITYVWKNDEGTL 276


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 81  SWSRRAFSKGRRGVTYVFENTDGTL 7
           S++  + S  +  +TYV++N +GTL
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTL 225


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 248 RFKRRDWENPGVTQLNRLAAHPPF 319
           RFKR  +E P V ++++  + P F
Sbjct: 608 RFKRGKYEEPTVGEISQDGSSPHF 631


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 571 ESTFFNSGLLFQTGTTLNPISSILLIYK 488
           E  +  SG L+   TT+NPI   L+  K
Sbjct: 307 EWLYILSGCLYYFSTTINPILYNLMSIK 334


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 297 ALQHIPLSPAGVIAKRPAPIALPNSC 374
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 297 ALQHIPLSPAGVIAKRPAPIALPNSC 374
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,406
Number of Sequences: 438
Number of extensions: 4583
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)