Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30064
(736 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 92 3e-19
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 91 5e-19
At1g06120.1 68414.m00641 fatty acid desaturase family protein si... 32 0.34
At1g06090.1 68414.m00638 fatty acid desaturase family protein si... 31 1.0
At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.4
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb... 29 2.4
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 29 4.2
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa... 28 7.4
At1g64960.1 68414.m07363 expressed protein 27 9.8
At1g45207.2 68414.m05186 remorin family protein Since this genom... 27 9.8
At1g27020.1 68414.m03294 expressed protein 27 9.8
At1g09000.1 68414.m01004 NPK1-related protein kinase, putative (... 27 9.8
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 92.3 bits (219), Expect = 3e-19
Identities = 39/56 (69%), Positives = 50/56 (89%)
Frame = +2
Query: 23 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 190
+ KT+ PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+
Sbjct: 10 YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLD 65
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 91.5 bits (217), Expect = 5e-19
Identities = 40/56 (71%), Positives = 49/56 (87%)
Frame = +2
Query: 23 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 190
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARELLTL+
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLD 65
>At1g06120.1 68414.m00641 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]; supported
by cDNA:gi_12083275_gb_AF332434.1_AF332434
Length = 299
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 575 VGVHVL**WTLVPNWNNTQPYLVYSFDL*GILPISAYWLKN 453
+G+H+L W LV W PYL +S + G + A WL N
Sbjct: 174 IGLHILTFWILVYLWGGL-PYLTWSVGVGGAIGYHATWLIN 213
>At1g06090.1 68414.m00638 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]
Length = 299
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 575 VGVHVL**WTLVPNWNNTQPYLVYSFDL*GILPISAYWLKN 453
+G+H+L WTLV W PYL + G + + WL N
Sbjct: 174 IGLHILTFWTLVYLWGGL-PYLTCGVGVGGTIGYNGTWLIN 213
>At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 488
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Frame = +3
Query: 495 IKRIDEIGLSV------VPVWNKSPLLKNVDSNVKGRKT 593
+ ID++GLS VPVW P+LK+ D V R T
Sbjct: 231 VAEIDQMGLSYFRRITGVPVWPVGPVLKSPDKKVGSRST 269
>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
(RbohE) / NADPH oxidase nearly identical to respiratory
burst oxidase protein E GI:3242787 [gi:3242787] from
[Arabidopsis thaliana]
Length = 926
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 562 TWTPTSK--GEKPSIRAMAHYVNHHPNQVFWGRGAVK 666
T TPTS G+K +++A ++V P V W RG ++
Sbjct: 777 TATPTSTHGGKKKAVKAHFYWVTREPGSVEWFRGVME 813
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 29 KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 145
K ++ PRR P + Q E K EYG RN E W + T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519
>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
family protein similar to C-terminal zinc-finger
[Glycine max] GI:558543; contains Pfam profile: PF00097
zinc finger, C3HC4 type (RING finger)
Length = 486
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 568 TPTSKGEKPSIRAMAHYVNHHP 633
T +S+ PS+ HY++HHP
Sbjct: 260 TSSSRNPTPSVYQRNHYISHHP 281
>At1g64960.1 68414.m07363 expressed protein
Length = 1168
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 654 RCRKALNRNPKGSPRF 701
RCR +NRNPK RF
Sbjct: 552 RCRTLINRNPKAGARF 567
>At1g45207.2 68414.m05186 remorin family protein Since this genomic
sequence region is unfinished, the annotated gene may be
missing a stop codon or start codon
Length = 555
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = -2
Query: 417 QNINAYNLPFAIQXRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFSQSRRLKRRPV 238
QN+++ F++ R C E RS R+ +L ++L + LS VT + +KR V
Sbjct: 118 QNLDSARSSFSVALRECQERRS-RSEALAKKLDYQRTVSLDLSNVTSTSPRVVNVKRASV 176
Query: 237 NCN 229
+ N
Sbjct: 177 STN 179
>At1g27020.1 68414.m03294 expressed protein
Length = 308
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 266 WENPGVTQLNRLAAHPPFASW 328
WE P T N+LA FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183
>At1g09000.1 68414.m01004 NPK1-related protein kinase, putative
(ANP1) similar to protein kinase [Nicotiana tabacum]
gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
protein kinase 1S GI:2342422
Length = 666
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 458 LTNRPKSAKSLINQKNRRDRVECCSSLEQESTIKERGLQRQRAKNRLS 601
L+ K K ++Q+ R R E S+ ++RG+ RQR K+R +
Sbjct: 615 LSEIEKKWKEELDQELERKRQEIMRQAGLGSSPRDRGMSRQREKSRFA 662
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,795,269
Number of Sequences: 28952
Number of extensions: 325714
Number of successful extensions: 784
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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