Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30063
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0036 + 3217163-3217584,3217752-3218322 30 1.8
08_01_1084 - 11120719-11120950,11121035-11121133,11122446-111228... 29 4.1
08_01_0351 + 3095639-3095995,3096134-3096187,3096407-3096490,309... 29 4.1
02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411 29 4.1
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 28 7.2
04_04_1586 - 34621945-34623366 28 7.2
02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558... 28 7.2
12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686 28 9.5
06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554 28 9.5
06_01_0092 - 775290-775691 28 9.5
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 58 ITIHWPSFYNVV-TGKTLALPNLIALQH 138
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>08_01_1084 -
11120719-11120950,11121035-11121133,11122446-11122849,
11123559-11124197
Length = 457
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = -3
Query: 687 PPDAPCSGALSAA-GVVVTRSVTATLASAPSARSFRF-----LPFLSRHVRRLSP 541
PP+APCS LS++ + + +A+ A+ P R F L HVRR+ P
Sbjct: 95 PPEAPCSTRLSSSLASAILAAASASPAAPPPVRDDGFDAGAELVLRPSHVRRVVP 149
>08_01_0351 +
3095639-3095995,3096134-3096187,3096407-3096490,
3096972-3097097,3097174-3097241,3097324-3097393,
3097597-3097662,3098404-3098454
Length = 291
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -3
Query: 690 VPPDAPCSGALSAAGVVVTRSVTATLASAPSARSFRF--LPFLSRHVRRLSPSSSKSGA 520
+PP AP + A +AA R +A P A + P+ RH+ S SSS + A
Sbjct: 25 LPPPAPATAAAAAAQAAALRFGSAATTRVPRALALTASTCPWHRRHLCSSSSSSSSAAA 83
>02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411
Length = 229
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 600 SARSFRFLPFLSRHVRRLSPSSSKSGAP 517
SA R+ PFLSR +R S S+ SG P
Sbjct: 193 SATDGRYAPFLSRQPQRSSAGSTHSGKP 220
>12_01_0503 -
3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 732 KNKQIGVPRTFPRKVPPDAPCSGALSAAGVVVTRSVTATLASAPSAR 592
+ + + +PR+ K+PP P A SAA + A A+AP+ R
Sbjct: 819 RKRMVDIPRSVS-KMPP-LPSPAAASAAAAAAAPTTAAAAAAAPAPR 863
>04_04_1586 - 34621945-34623366
Length = 473
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 428 YQGDGPLREPSP*SSFLGSRCRKALNRTLKG 520
Y PL +P+ SSF G C A+ RTL G
Sbjct: 165 YAQTDPLFDPAASSSFSGVSCGSAICRTLSG 195
>02_01_0753 -
5586705-5586766,5587864-5588056,5588154-5588423,
5588522-5588687,5589049-5589209,5590065-5590181,
5590269-5590549,5590750-5590833,5591100-5592542,
5593167-5593575
Length = 1061
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -3
Query: 768 VSGRIHIWNVFRKNKQIGVPRTFPRKVPPDAPCSGALS---AAGVVVTRSVTATLASAPS 598
V+G I + + PR P ++ D PCS S A + RSV T AS+ S
Sbjct: 137 VAGEIRLRIYLSRTAICDEPRNMPMQLINDTPCSSMRSVGTTASSLSARSV-GTTASSLS 195
Query: 597 ARS 589
ARS
Sbjct: 196 ARS 198
>12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686
Length = 601
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 696 RKVPPDAPCSGALSAAGVVVTRSVTA 619
R++ PDAP S A SAAG+ R V A
Sbjct: 332 REIDPDAPFSVAFSAAGMGWARYVVA 357
>06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554
Length = 449
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 711 PRTFPRKVPPDAPCSGALSAAGVVVTRSVTATLASAPSARS 589
P P PP AP + + +A T + A +AP+A S
Sbjct: 346 PAAVPCTAPPAAPAAASTAAPAAASTAAPAAASTAAPAAAS 386
>06_01_0092 - 775290-775691
Length = 133
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 178 RASSLLRQLAKGGCAARR 125
RA+SLLRQL + GCAA +
Sbjct: 22 RAASLLRQLIEDGCAAAK 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,619,182
Number of Sequences: 37544
Number of extensions: 457245
Number of successful extensions: 1399
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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