Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30063
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    28   6.4  

>Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical
           protein T19B10.5 protein.
          Length = 705

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -3

Query: 753 HIWNVFRKNKQIGVPRTFPRKVPPDAPCSGALSAAGVVVTRSVTATLASAPSARSFRF 580
           ++W+   + K+  + +T     PP A  SG  + +   +T +VTAT+   PS  + ++
Sbjct: 617 NVWSRLYQEKKGNLRKTRDVSSPPTAHTSGIPTPSRSSITSTVTATVGKTPSTDNEKY 674


>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 139 IPLSPAGVIAKRPAPIALPNS-CAPAM 216
           IP++PA V+A R  P ALP S C P +
Sbjct: 145 IPVAPAPVVAGRLIPQALPGSPCEPGV 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,522,393
Number of Sequences: 27780
Number of extensions: 363263
Number of successful extensions: 888
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)