Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30063
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    30   2.0  
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    29   2.6  
At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profi...    28   6.0  
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    28   7.9  
At3g02770.1 68416.m00269 dimethylmenaquinone methyltransferase f...    28   7.9  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    28   7.9  

>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 337 DRDRVECCSSLEQESTIKERGLQRQRAKNRLSGR 438
           D+D  E CS+ E ES ++E  L +++A N++ GR
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGR 466


>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 393 TWTPTSK--GEKPSIRAMAHYVNHHPNQVFWGRGAVK 497
           T TPTS   G+K +++A  ++V   P  V W RG ++
Sbjct: 777 TATPTSTHGGKKKAVKAHFYWVTREPGSVEWFRGVME 813


>At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profile:
           PF05669 SOH1
          Length = 196

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -3

Query: 759 RIHIWNVFRKNKQIGV-PRTFPRKVPPDAPCSGALSAAGVVVTRSVTATLASAPSARSFR 583
           + + W  +R N+   + PR  P  VPP  P + + S     +  + +AT A +P+    +
Sbjct: 115 QFYYWKNYRNNRLKHILPRPLPEPVPPQPPVAPSTS-----LPPAPSATAALSPALSPMQ 169

Query: 582 FLPFLSRHVRR 550
           +   LS++  R
Sbjct: 170 YNNMLSKNDTR 180


>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 399 TPTSKGEKPSIRAMAHYVNHHP 464
           T +S+   PS+    HY++HHP
Sbjct: 260 TSSSRNPTPSVYQRNHYISHHP 281


>At3g02770.1 68416.m00269 dimethylmenaquinone methyltransferase
           family protein similar to bacterial
           S-adenosylmethionine:2-demethylmenaquinone
           methyltransferases; contains Pfam profile PF03737:
           Dimethylmenaquinone methyltransferase
          Length = 166

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 129 LAAHPPFASWRNSEEARTDRPSQQLRTCNGEWQIVSVNILLKSR 260
           LA+HP  AS +   E R        R C+GEW     + +L S+
Sbjct: 118 LASHPIKASKKGLGEQRVSLNIAGTRICDGEWLYADTDGILVSQ 161


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +1

Query: 43  PIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 207
           PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA
Sbjct: 576 PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCA 630


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,673,211
Number of Sequences: 28952
Number of extensions: 340799
Number of successful extensions: 862
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)