Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30061
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 82 7e-17
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 45 9e-06
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 41 2e-04
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 40 3e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 38 0.001
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 37 0.002
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 37 0.003
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 36 0.006
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 35 0.010
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 33 0.053
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 32 0.070
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 31 0.21
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 30 0.28
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 28 1.1
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 27 2.0
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 27 2.0
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 27 3.5
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.6
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 4.6
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy... 26 6.1
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 26 6.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 8.0
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 8.0
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 8.0
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 25 8.0
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 82.2 bits (194), Expect = 7e-17
Identities = 41/68 (60%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Frame = -2
Query: 707 AAGATSLCFVYPLDFARTRLAADV--GKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGV 534
AAGA SL FVY LD+ARTRLA D K G+R+F+GL + K ++SDGL GLYRGFG
Sbjct: 141 AAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGP 200
Query: 533 SVQGIIIY 510
SV GI++Y
Sbjct: 201 SVVGIVVY 208
Score = 66.9 bits (156), Expect = 3e-12
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = -1
Query: 501 YFGFYDTARGM-LPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDI 325
YFG YDT + + L P + S+ + VTT +G+ SYP DT+RRRMMM SG A +
Sbjct: 212 YFGMYDTLKPVVLVGPLEGNFLASFLLGWAVTTGSGVASYPLDTIRRRMMMTSGEA---V 268
Query: 324 LYKNTIHCWATIAKTEGTSAFFK 256
Y ++ C I EG +FFK
Sbjct: 269 KYSSSFECGRQILAKEGARSFFK 291
Score = 32.3 bits (70), Expect = 0.070
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 277 GNLGLLQGAFSNVLRGTGGAFVLVLYDEIKKVL 179
G +GA +N+LRG GA VL +YD+++ ++
Sbjct: 285 GARSFFKGAGANILRGVAGAGVLSIYDQVQLLM 317
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -2
Query: 611 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYLP 504
+ G+G C + +G+I L+RG + ++ Y P
Sbjct: 71 YKGIGECFKRTAAEEGVISLWRG---NTANVLRYFP 103
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 45.2 bits (102), Expect = 9e-06
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 543
AG + + +YPLD +TR+ VGK D ++G +C+ KI K++G LYRG
Sbjct: 18 AGISEVLTLYPLDVVKTRMQLSVGKSD----YNGTFDCLKKIVKNEGPHRLYRG 67
Score = 35.1 bits (77), Expect = 0.010
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -1
Query: 453 NTPIVISWAIAQTVTTVAGIIS-YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTE 277
N P +++A A V ++ +++ YP D V+ RM + G KSD Y T C I K E
Sbjct: 5 NIPFPVTFA-AGAVAGISEVLTLYPLDVVKTRMQLSVG--KSD--YNGTFDCLKKIVKNE 59
Query: 276 GTSAFFK 256
G ++
Sbjct: 60 GPHRLYR 66
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 40.7 bits (91), Expect = 2e-04
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = -2
Query: 707 AAGATSLCFVYPLDFARTRLAA-----DVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 543
AAG S V PLD +TR A G G G + + IF ++G+ GLYRG
Sbjct: 14 AAGLASSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRG 73
Query: 542 FGVSVQGIIIYLPHTSV 492
G + G YLP S+
Sbjct: 74 VGPMMLG---YLPSWSI 87
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 40.3 bits (90), Expect = 3e-04
Identities = 22/83 (26%), Positives = 41/83 (49%)
Frame = -1
Query: 507 ASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSD 328
A YF + + + + P+ + A A +T ++ PFD +++RM + S +
Sbjct: 93 AIYFSVLEFFKSKINASPDRPLASALAGACAIT-ISDAFMTPFDVIKQRMQLPSRK---- 147
Query: 327 ILYKNTIHCWATIAKTEGTSAFF 259
YK+ +HC T+ + EG AF+
Sbjct: 148 --YKSALHCATTVFRNEGLGAFY 168
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 543
+G+T V+PL+ RTRL G + G +C K K++G GLY+G
Sbjct: 345 SGSTGATIVFPLNVIRTRLQTQ-GTSAHPATYDGFIDCFYKTTKNEGFRGLYKG 397
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRL-AADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSV 528
AG+ + F+YP+D + R+ +D+ +G + L N +++KS G+ G YRG V +
Sbjct: 238 AGSVAQMFIYPVDTLKFRIQCSDLSRGQHGKSII-LSNA-KELYKSVGIRGYYRGVLVGI 295
Query: 527 QGIIIY 510
G+ Y
Sbjct: 296 LGMFPY 301
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/94 (24%), Positives = 42/94 (44%)
Frame = -1
Query: 504 SYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDI 325
+Y + + LP + V ++ + + + P DTV+ RM QS A +
Sbjct: 183 AYNSIKQSLQSRLPPDEKLSTVTTFLVGSVAGIITVYCTQPIDTVKSRM--QSLSASKE- 239
Query: 324 LYKNTIHCWATIAKTEGTSAFFKEPSPTSSEVLV 223
YKN+IHC I +G F+ +P + +++
Sbjct: 240 -YKNSIHCAYKILTQDGLLRFWSGATPRLARLIL 272
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRL 648
AGA + YP +FA+TRL
Sbjct: 27 AGAIEISITYPAEFAKTRL 45
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -1
Query: 396 IISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFK 256
++ PFD V+ R+ QS + +Y N + C I+K EG +AF+K
Sbjct: 33 LVGQPFDCVKVRLQSQSNVSP---IYNNALDCVKKISKNEGLAAFYK 76
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = -2
Query: 707 AAGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSV 528
+ G + P D + RL + + + ++ +C+ KI K++GL Y+G + +
Sbjct: 26 SGGVAQVLVGQPFDCVKVRLQS---QSNVSPIYNNALDCVKKISKNEGLAAFYKGTVLPL 82
Query: 527 QGI 519
GI
Sbjct: 83 LGI 85
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGF 540
AG YP D ++++ D + + C I+ GL G YRGF
Sbjct: 222 AGYAMWLAAYPFDIVKSKIQTDGFLS--KATYKNSWQCAKGIYTKAGLRGFYRGF 274
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 35.9 bits (79), Expect = 0.006
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQ 525
AG + P+ +TRL D G + S + +CI K + +G GLY+G S+
Sbjct: 172 AGVITSAATNPIWLVKTRLQLDKKSGQAAQYRSSI-DCIIKTIRLEGFRGLYKGLSASLL 230
Query: 524 GI 519
G+
Sbjct: 231 GV 232
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 35.1 bits (77), Expect = 0.010
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = -2
Query: 707 AAGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 543
+AGA S C+ PL+ AR + + + KG Q G+ I I+K++G+ GLYRG
Sbjct: 214 SAGALS-CWNQPLEVARVEMQS-LTKGI-QHSSPGIMQTIMSIYKNNGIKGLYRG 265
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 32.7 bits (71), Expect = 0.053
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -2
Query: 596 NCISKIFKSDGLIGLYRGFGVSVQGIIIYLPHT 498
N IS + +S+GL G YRG+ + G+ IYLP T
Sbjct: 121 NTISTLARSEGLKGFYRGYWM---GVAIYLPTT 150
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 32.3 bits (70), Expect = 0.070
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = -2
Query: 605 GLGNCISKIFKSDGLIGLYRGFG 537
G+ + + ++KS+GL+GL+RGFG
Sbjct: 283 GIRHVLGGLYKSEGLLGLFRGFG 305
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 30.7 bits (66), Expect = 0.21
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 596 NCISKIFKSDGLIGLYRGFGVSVQGIIIYLPHT 498
+CI K +S+G LY+GFG + I PHT
Sbjct: 271 DCILKTIRSEGFFALYKGFGAHLARI---APHT 300
Score = 29.9 bits (64), Expect = 0.37
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -1
Query: 381 FDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFK 256
FDTV RM Q K+ LYKN I C ++EG A +K
Sbjct: 250 FDTVMTRMYNQ----KNKELYKNPIDCILKTIRSEGFFALYK 287
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 30.3 bits (65), Expect = 0.28
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -2
Query: 701 GATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQG 522
G +P D R R + G G + + + I I+K++G+ G +RG+ ++
Sbjct: 237 GIIGQTLTFPADVLRRRFQVNRIPGIGHN-YKNIKSAIFHIYKTEGINGFFRGYSSNMLK 295
Query: 521 II 516
II
Sbjct: 296 II 297
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAAD 639
AGA S YPLD ARTRL+ +
Sbjct: 125 AGAASCATTYPLDIARTRLSIE 146
Score = 29.1 bits (62), Expect = 0.65
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 617 REFSGLGNCISKIFKSDGLIGLYRGFGVS 531
+E++ L + + KI+ +GLIG +RG G +
Sbjct: 54 KEYTSLTSTLVKIWNREGLIGFFRGNGTN 82
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -1
Query: 393 ISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKEPSPTSSEVLVV 220
+++P D +RRR + YKN I KTEG + FF+ S +++ V
Sbjct: 243 LTFPADVLRRRFQVNRIPGIGHN-YKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIPV 299
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -2
Query: 707 AAGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSV 528
AAG S ++PLD A+ ++ A + + D + F S I + + LY G ++V
Sbjct: 9 AAGTASTLIMHPLDLAKIQMQASMNQ-DSKSLFQVFK---SNIGSNGSIRSLYHGLSINV 64
Query: 527 QG 522
G
Sbjct: 65 LG 66
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 611 FSGLGNCISKIFKSDGLIGLYRGFGVS 531
++ + + I I+K +G+ G +RGFGV+
Sbjct: 141 YTTIYSSIRDIWKKEGISGFFRGFGVT 167
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLA--ADVGKGD----------GQREFSGLGNCISKIFKSDGL 561
AG S+ F YPL+ R RLA + GK +R+F + + +
Sbjct: 126 AGTCSVFFTYPLELIRVRLAYITNTGKNPTLTQVTKDIFHERDFL-CNKKYPGLSRLSKI 184
Query: 560 IGLYRGFGVSVQGIIIY 510
YRGF V++ GI Y
Sbjct: 185 CNFYRGFSVTLTGIFPY 201
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSV 528
AG +P D ++L ++ G+G G ++I+K G GL+ G GV +
Sbjct: 231 AGVLCAIISHPADVMVSKLNSNKKAGEGA------GAAAARIYKEIGFSGLWNGLGVRI 283
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = -1
Query: 546 RFRCVRARYHHLPASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTV 403
+F C+ RYH L + +Y ++ M + I++ ++I T+V
Sbjct: 890 KFFCIDERYHFLEKQWTLYYSHSKLMFSPFSSQRIILLYSIINKETSV 937
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 209 EHEGTTSTSEDVGEGSLKKAEVPSVL 286
+HE +ST+ V +GSL++ E P+ L
Sbjct: 260 KHEALSSTANIVKDGSLERTEPPNSL 285
>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 327
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 474 GMLPDPKNTPIVISWAIAQTVTTV 403
GMLPDPK+ P++ +T V
Sbjct: 89 GMLPDPKSIPVISQALTKYKITDV 112
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 611 FSGLGNCISKIFKSDGLIGLYRG 543
F + +C K++GL GLYRG
Sbjct: 50 FPTIRSCFQNAVKNEGLKGLYRG 72
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 11 VSSFFFFFLWNHCITLYLTKNKL 79
+SS F+ WN CI +++N +
Sbjct: 1253 LSSAIFYSAWNQCIASVISRNNI 1275
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 271 LGLLQGAFSNVLRGTGGAF 215
LGL+ G F N +RG+G A+
Sbjct: 846 LGLMDGPFWNTIRGSGLAY 864
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = -1
Query: 381 FDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKE 253
F + + +Q+ R + I+Y + +HC + + G F +E
Sbjct: 420 FQSFWNNVFIQAERYEPSIIYLDDVHCLISSSNENGELGFVEE 462
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 361 HDDAVWSCQERYPV----QEHHPLLGYHCQDRGNLGLLQGAFSNVLR 233
H + + S + Y + ++ + + C +GNL L GAF N ++
Sbjct: 278 HSETIQSLESHYKLNQVGEKEYSTISDLCFSKGNLFLYTGAFDNAVK 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,131
Number of Sequences: 5004
Number of extensions: 53129
Number of successful extensions: 227
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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