Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30061
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 43 2e-04
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 41 0.001
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 41 0.001
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 40 0.001
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 39 0.003
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 39 0.005
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 39 0.005
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.011
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.014
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.074
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 34 0.13
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 34 0.13
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.17
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17) 33 0.17
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 33 0.30
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05) 31 0.69
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 31 1.2
SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7) 29 2.8
SB_48633| Best HMM Match : GT36_AF (HMM E-Value=3.8) 29 4.9
SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07) 29 4.9
SB_31266| Best HMM Match : PKI (HMM E-Value=1) 29 4.9
SB_27075| Best HMM Match : rve (HMM E-Value=1.5e-16) 29 4.9
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 28 6.5
SB_41962| Best HMM Match : RVT_1 (HMM E-Value=1.4e-18) 28 8.5
SB_17208| Best HMM Match : RVT_1 (HMM E-Value=6.4e-19) 28 8.5
SB_14466| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 28 8.5
SB_49175| Best HMM Match : RVT_1 (HMM E-Value=1.8e-32) 28 8.5
SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 79.8 bits (188), Expect = 2e-15
Identities = 40/68 (58%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Frame = -2
Query: 707 AAGATSLCFVYPLDFARTRLAAD--VGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGV 534
AAGA SL FVY LD+ RTRLA D VGK G+R+F+G+ + K SDGL+GLYRGF +
Sbjct: 122 AAGAMSLFFVYSLDYCRTRLANDAKVGKKGGERQFNGMIDVYKKTIASDGLVGLYRGFVI 181
Query: 533 SVQGIIIY 510
S GII+Y
Sbjct: 182 SCVGIIVY 189
Score = 70.1 bits (164), Expect = 2e-12
Identities = 37/82 (45%), Positives = 49/82 (59%)
Frame = -1
Query: 501 YFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDIL 322
YFG YDT + +L ++ +VIS+ + VT AG+ SYP DT+RRRMMM SG A +
Sbjct: 193 YFGLYDTLKPILLG-EDAGVVISFVLGYGVTVSAGLASYPIDTIRRRMMMTSGEA---VK 248
Query: 321 YKNTIHCWATIAKTEGTSAFFK 256
YK +I C I K EG + K
Sbjct: 249 YKGSIDCTIQILKKEGAMSLMK 270
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = -1
Query: 456 KNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTE 277
+ P+ V+ +YP D VRRRM M+ RA D YK+T+H +++I K E
Sbjct: 157 RELPVNFKLMCGSLAGAVSQTATYPLDVVRRRMQMKGIRA--DFAYKSTLHAFSSIVKLE 214
Query: 276 GTSAFFK 256
G +K
Sbjct: 215 GFRGLYK 221
Score = 31.1 bits (67), Expect = 0.92
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 543
AGA S YPLD R R+ + D + + S I K +G GLY+G
Sbjct: 171 AGAVSQTATYPLDVVRRRMQMKGIRAD--FAYKSTLHAFSSIVKLEGFRGLYKG 222
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/75 (30%), Positives = 42/75 (56%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQ 525
AG T+ V PLD +TRL + + G+ ++G+ +C KI+ ++GL Y+G +V
Sbjct: 215 AGMTASVAVNPLDVIKTRLQL-LNRPQGEPNYNGIIDCAKKIYSNEGLAAFYKG---AVP 270
Query: 524 GIIIYLPHTSVSTTL 480
+I+ P ++ T+
Sbjct: 271 RMIVIAPLFGIAQTV 285
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -1
Query: 402 AGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKEPSP 244
A + P D ++ R+ + + R + + Y I C I EG +AF+K P
Sbjct: 219 ASVAVNPLDVIKTRLQLLN-RPQGEPNYNGIIDCAKKIYSNEGLAAFYKGAVP 270
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSD-GLIGLYRGF 540
AG T+ YPLD R+RLA V + + G+ + +IF ++ G++ LYRGF
Sbjct: 8 AGLTACSCTYPLDIVRSRLAFQVA---DEHTYCGICQTVKQIFMTEGGMVALYRGF 60
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGL-IGLYRGFGVS 531
AGATS YPLD R R+ DG + +S N ++ DG+ GLYRG ++
Sbjct: 116 AGATSQTLAYPLDVVRRRMQLAGTVADGHK-YSTCINTFISVYTEDGIRRGLYRGLSIN 173
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = -2
Query: 698 ATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGI 519
AT VYP+D +TR+ + ++ + +C K+ +++G IGLYRG + G+
Sbjct: 925 ATGATAVYPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLLGV 984
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 387 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFK 256
YP D V+ RM Q +++ +YKN+I C+ + + EG ++
Sbjct: 932 YPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYR 975
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = -2
Query: 695 TSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGII 516
T+ YPLD R RLA +++++GL N ++I++ +G+ YRG+ ++ GI+
Sbjct: 2 TAALLTYPLDMVRARLAI-----TQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIM 56
Query: 515 IY 510
Y
Sbjct: 57 PY 58
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQ 525
AG S +YPL+ +TRLA + GQ + GL + S I++ +G+ YRG S+
Sbjct: 240 AGVASQTSIYPLEVLKTRLAI---RKTGQ--YRGLLHAASVIYQKEGIRSFYRGLFPSLL 294
Query: 524 GIIIY 510
GII Y
Sbjct: 295 GIIPY 299
Score = 36.3 bits (80), Expect = 0.024
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 677 YPLDFARTRLAADVG-KGDGQREFSGLGNCISKIFKSDGLIGLYRG 543
YPL RTRL A KG GQ + + + + KI DG GLYRG
Sbjct: 346 YPLSLVRTRLQAQAREKGGGQGD--NMVSVLRKIITEDGFKGLYRG 389
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQ 525
AG +C +P ++ +T+L D + + + G +C+ K K G++GLYRG +
Sbjct: 50 AGGLEICCTFPTEYVKTQLQLD--EKAAKPIYRGPIDCVKKTVKGHGVLGLYRGLSSLLY 107
Query: 524 GII 516
G +
Sbjct: 108 GSV 110
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = -2
Query: 698 ATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGI 519
ATSLC YP + ARTRL + G++++ + + + +G GLY G G V
Sbjct: 945 ATSLC--YPHEVARTRLRQQESEFLGRQKYRSFFQTLGTVLREEGWRGLYGGLGTHV--- 999
Query: 518 IIYLPHTSV 492
I +P+T++
Sbjct: 1000 IRQVPNTAI 1008
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 543
AGA + YPLD R R+ + +G+G ++S + I +S+G IGL++G
Sbjct: 691 AGAVAQSGTYPLDVVRRRMQME--RGEGMFKYSSTWDGFKVIVRSEGFIGLFKG 742
Score = 35.5 bits (78), Expect = 0.043
Identities = 12/35 (34%), Positives = 25/35 (71%)
Frame = -2
Query: 614 EFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIY 510
++SG+G ++KI++ +GL G ++G G ++ I+ Y
Sbjct: 590 KYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPY 624
Score = 35.5 bits (78), Expect = 0.043
Identities = 23/73 (31%), Positives = 31/73 (42%)
Frame = -1
Query: 447 PIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTS 268
P+V VA +YP D VRRRM M+ G Y +T + I ++EG
Sbjct: 680 PVVAKLFCGAVAGAVAQSGTYPLDVVRRRMQMERGEGM--FKYSSTWDGFKVIVRSEGFI 737
Query: 267 AFFKEPSPTSSEV 229
FK P +V
Sbjct: 738 GLFKGMWPNLLKV 750
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGF 540
AG T+ YPLD R+RLA V + G + CIS K G LY+GF
Sbjct: 74 AGMTACACTYPLDMVRSRLAFQVAQDQGYTTITQTIRCIS--VKEGGPKALYKGF 126
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGL-IGLYRGFGVS 531
AGA S YPLD R R+ DG + ++ N + ++K DG+ GLYRG ++
Sbjct: 182 AGAVSQTIAYPLDVVRRRMQLAGAVPDGHK-YNTCINTLVNVYKDDGIRRGLYRGLSIN 239
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 405 VAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEG 274
V+ I+YP D VRRRM + +G Y I+ + K +G
Sbjct: 185 VSQTIAYPLDVVRRRMQL-AGAVPDGHKYNTCINTLVNVYKDDG 227
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQR-EFSGLGNCISKIFKSDGLIGLYRGF 540
AG + C P+D RTR G+ + G +CI K + +G++ LY+GF
Sbjct: 221 AGFVATCVASPVDIVRTRFMTQPKDTKGRPLVYQGTLDCIYKTVRHEGILALYKGF 276
Score = 31.5 bits (68), Expect = 0.69
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = -1
Query: 495 GFYDTARGMLPDPKNTPIVISWAIAQTVTT--VAGIISYPFDTVRRRMMMQSGRAKSDIL 322
G Y+ + +L +T + I V++ + I+ P D V+ R Q+ + I
Sbjct: 95 GAYEPIKNLLGATDSTSAALWKKIVAGVSSGVIGSAIATPTDLVKIRF--QAVKIGETIP 152
Query: 321 YKNTIHCWATIAKTEGTSAFFKEPSPT 241
YKN H + IAK EG + PT
Sbjct: 153 YKNMFHAFYKIAKKEGFLGLWTGMKPT 179
>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 313
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -2
Query: 707 AAGATSLCFV---YPLDFARTRLAADVGKGDGQRE-FSGLGNCISKIFKSDGLIGLYRGF 540
A G +C + +PLD + RL G++ F+G +C K +++G GLY+G
Sbjct: 32 AGGFGGVCCIATGHPLDTIKVRLQTMPRPKPGEKPMFTGTFDCAMKTIRNEGFFGLYKGM 91
Query: 539 GVSVQGI 519
+ G+
Sbjct: 92 AAPITGV 98
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 34.7 bits (76), Expect = 0.074
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAAD--VGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 543
AG S YP+D ++ AD G Q +++G +C+ KI+ S G+ +G
Sbjct: 367 AGTLSWILTYPVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFGQG 422
Score = 31.5 bits (68), Expect = 0.69
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 620 QREFSGLGNCISKIFKSDGLIGLYRGFGVS 531
Q ++G +C+ K+F S+GL G +RG ++
Sbjct: 294 QMAYTGSLDCLKKVFHSEGLRGCFRGMAIT 323
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -2
Query: 611 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGI 519
++G+ +C +I K + ++GLY+G + G+
Sbjct: 191 YNGVFDCFKQIIKRESVLGLYKGMASPLAGL 221
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/45 (31%), Positives = 31/45 (68%)
Frame = -2
Query: 674 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGF 540
P+D A+TR+ ++ DG+ E+ G + +++I +++G+ L++GF
Sbjct: 113 PVDIAKTRIQ-NMRIIDGKPEYKGTMDVLARIVRNEGVFALWKGF 156
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -2
Query: 659 RTRLAADVGKGDGQR-EFSGLGNCISKIFKSDGLIGLYRGFG 537
R + V K G + + GLG+C+ +++++ GL G+++G G
Sbjct: 183 RVKCLLQVQKESGTKARYQGLGDCLLQVYRTGGLRGVFKGLG 224
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -2
Query: 704 AGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVS 531
AG + + PLD R + + K G + G +C+ +I++ G+ G+Y+G V+
Sbjct: 147 AGVATSFVLTPLD--RVKCILQIEKAFGGSSYGGPVDCLRRIYREAGVRGVYKGISVT 202
Score = 32.3 bits (70), Expect = 0.40
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -2
Query: 707 AAGATSLCFVYPLDFARTRL-AADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVS 531
AAGA + +PLD + RL A + K + +C KI +++G+ L+RG V
Sbjct: 47 AAGAAANLVGFPLDTIKVRLQAMPLPKPGEPWMYKNSFDCFFKIIRNEGVYYLFRGVTVP 106
Query: 530 VQGIIIYLPHTSV 492
I+ +P+T+V
Sbjct: 107 ---ILNSIPNTTV 116
>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
Length = 187
Score = 33.5 bits (73), Expect = 0.17
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = -1
Query: 432 WAIAQTVTTVAGIISYPFDTVRRRMMMQS---GRAKSDILYKNTIHCWATIAKTEGTSAF 262
+ + T + A + P + V+ RM +Q R + Y+N H TIAK EG A
Sbjct: 8 FVLGATAASGACFFTNPLEVVKTRMQLQGELKSRGTYSVYYRNVFHASYTIAKYEGILAM 67
Query: 261 FK 256
K
Sbjct: 68 QK 69
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 32.7 bits (71), Expect = 0.30
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -1
Query: 405 VAGIISYPFDTVRRRMMMQSGRAKSD--ILYKNTIHCWATIAKTEGTSAFFKEPSPT 241
V I P D + +M +Q RA+S I Y+N H TIA+T G ++ S T
Sbjct: 214 VVAFIEGPIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSAT 270
>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
Length = 383
Score = 31.5 bits (68), Expect = 0.69
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 596 NCISKIFKSDGLIGLYRGFGVSVQGIIIY 510
+C I++ +G+ G YRGFG + ++Y
Sbjct: 332 DCFRTIYQQEGIFGFYRGFGALLIQCVVY 360
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Frame = -1
Query: 405 VAGIISYPFDTVRRRMMMQSGRAKSDIL------------YKNTIHCWATIAKTEGTSAF 262
V +I YPF+TV R+ +Q R D L Y + + C+ TI + EG F
Sbjct: 287 VPDLILYPFETVLHRLYIQGTRTIIDDLDNAADVIPLSTNYFSMLDCFRTIYQQEGIFGF 346
Query: 261 FK 256
++
Sbjct: 347 YR 348
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 674 PLDFARTRLAADVGKGDGQRE-FSGLGNCISKIFKSDGLIGLYRG 543
PLD + RL A G+ F G +C K + +GL GLY+G
Sbjct: 40 PLDLLKVRLQAMNQVKPGETAPFKGAMDCFMKTVRLEGLRGLYKG 84
>SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 272
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 601 RPENSRWPSPLPTSAARRVRAKSRGYTK 684
RP +SR S P+SA+RR ++SRG +
Sbjct: 221 RPSSSRPSSARPSSASRRASSRSRGLAR 248
>SB_48633| Best HMM Match : GT36_AF (HMM E-Value=3.8)
Length = 571
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 361 APTDCVEGIGDDTGDCGYGLSDGPADYNGCVLRVGQHAT 477
AP D E + +CGY + P D N L+V H T
Sbjct: 256 APPDFQEVVFSLPSECGYSPGEKPMDLNELQLKVAIHPT 294
>SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07)
Length = 642
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 471 CHGQCRRNRSMRQVDDDTLHGHTETSVQTNQTVGLEDLADAVSETGEFTLAISLT 635
C G+ R+ S R DTLH +++ T T L+ A G F ++++
Sbjct: 401 CKGETERHSSGRYAPIDTLHEQSDSRQPTQDTYHTACLSTACLVVGAFGFCLTVS 455
>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
Length = 1507
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 514 MMIPCTDTPKPLYRPIRPSDLKILLMQ 594
+++PC P LYR +RP L+I + Q
Sbjct: 587 IILPCPSDPCSLYRELRPQALQIQMSQ 613
>SB_27075| Best HMM Match : rve (HMM E-Value=1.5e-16)
Length = 656
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -1
Query: 504 SYFGFYDTARGMLPDPKNTPIVISW---AIAQTVTTVAGIISYPFDTVRRRMMMQSGRAK 334
SY G T++G+ PDP+ VI + V + G ++Y ++ + +Q
Sbjct: 58 SYVGHRLTSQGLQPDPEKIKAVIDMPPPTDKEGVQRLIGTVNYLDKFIKNKAEIQG--PI 115
Query: 333 SDILYKNTIHCWAT 292
S +L K+ I W T
Sbjct: 116 SQLLQKDAIFVWDT 129
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 384 PFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFK 256
P + +++R+ M Y+ IHC ++ K EG AF++
Sbjct: 17 PIEVIKQRLQMYGSP------YRGVIHCATSVFKEEGIRAFYR 53
>SB_41962| Best HMM Match : RVT_1 (HMM E-Value=1.4e-18)
Length = 1052
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -1
Query: 504 SYFGFYDTARGMLPDPKNTPIVISW---AIAQTVTTVAGIISYPFDTVRRRMMMQSGRAK 334
SY G T++G+ PDP+ +I + V + G ++Y ++ + +Q
Sbjct: 363 SYVGHRLTSQGLQPDPEKIKAIIDMPPPTDKEGVQRLIGTVNYLDKFIQNKAEIQG--PI 420
Query: 333 SDILYKNTIHCWAT 292
S +L K+ I W T
Sbjct: 421 SQLLQKDAIFVWDT 434
>SB_17208| Best HMM Match : RVT_1 (HMM E-Value=6.4e-19)
Length = 1053
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -1
Query: 504 SYFGFYDTARGMLPDPKNTPIVISW---AIAQTVTTVAGIISYPFDTVRRRMMMQSGRAK 334
SY G T++G+ PDP+ +I + V + G ++Y ++ + +Q
Sbjct: 849 SYVGHRLTSQGLQPDPEKIKAIIDMPPPTDKEGVQRLIGTVNYLDKFIQNKAEIQG--PI 906
Query: 333 SDILYKNTIHCWAT 292
S +L K+ I W T
Sbjct: 907 SQLLQKDAIFVWDT 920
>SB_14466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1052
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -1
Query: 504 SYFGFYDTARGMLPDPKNTPIVISW---AIAQTVTTVAGIISYPFDTVRRRMMMQSGRAK 334
SY G T++G+ PDP+ +I + V + G ++Y ++ + +Q
Sbjct: 363 SYVGHRLTSQGLQPDPEKIKAIIDMPPPTDKEGVQRLIGTVNYLDKFIQNKAEIQG--PI 420
Query: 333 SDILYKNTIHCWAT 292
S +L K+ I W T
Sbjct: 421 SQLLQKDAIFVWDT 434
>SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
Length = 609
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 591 HQQDLQVRRSDWSVQRFRCVRARYHHLPASYFGFYDTARGMLPDPKNTPI 442
H+ ++RS +F +A+ SY G TA G+ PDP+ +P+
Sbjct: 524 HKMIAVLKRSREIGLKFNPRKAKLRVPEVSYVGHLFTADGLKPDPEKSPM 573
>SB_49175| Best HMM Match : RVT_1 (HMM E-Value=1.8e-32)
Length = 823
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -1
Query: 567 RSDWSVQRFRCVRARYHHLPASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVA 400
+S+ S+Q + Y +FG+ + G+ PDPK V++ QT++T +
Sbjct: 631 KSEGSLQTLNKSKCEYGKEKLEFFGYVFSKDGISPDPKKVEDVVN---LQTLSTAS 683
>SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1451
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -1
Query: 504 SYFGFYDTARGMLPDPKNTPIVISW---AIAQTVTTVAGIISYPFDTVRRRMMMQSGRAK 334
SY G T++G+ PDP+ VI + V + G ++Y ++ + +Q
Sbjct: 518 SYVGHRLTSQGLQPDPEKIKAVIDMPPPRDKEGVQRLIGTVNYLDKFIQNKAEIQG--PI 575
Query: 333 SDILYKNTIHCWAT 292
S +L K+ I W T
Sbjct: 576 SQLLQKDAIFVWDT 589
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,691,660
Number of Sequences: 59808
Number of extensions: 429468
Number of successful extensions: 1359
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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