Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30060
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    28   1.8  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    27   3.2  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   3.2  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   3.2  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    27   4.2  
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c...    27   4.2  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   5.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   9.7  

>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 528 PLWVTPSTLVFKDEGTIIETVPLPGSGIGTGFPFAQRALFFIIF 397
           P W T  T+V  D G+    + + G  +GTGF F   A   I+F
Sbjct: 134 PYWDT--TMVIPDYGS--NEIYIDGMSVGTGFSFVWSACVAILF 173


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 557 FPDLSAASSGHFGLPRQHSFLKTRERLLKRFRC 459
           F DLS+   G  G+ R+ SF  TR+++L   +C
Sbjct: 347 FEDLSSDKLGSAGIVREVSFGTTRDKILVIEKC 379


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 390  YKKTRHIDIRSLLELRID*LASNYCSRETLLHVSPPGPRWSICYYPKICTDGG 232
            Y +T  +DI SL+ + I+   +N      L +++  GPR +     KI   GG
Sbjct: 844  YLETALVDISSLVGIDINEAVTNKYEANILPYIAGLGPRKADYVLKKIAATGG 896


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 733 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 605
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 278 LAGVFATTPRSAPTEAPSGSRPDPS 204
           L+     TP SAPT   +G+ P PS
Sbjct: 450 LSAAATATPMSAPTSVLTGTSPQPS 474


>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 232 ASVGADLGVVANTPARPWRTDVEKGFA*TVVARESVDP 345
           A V AD G +      PWR   ++GF    V  ES+ P
Sbjct: 45  AIVLADKGFMLEQVCLPWRYFTDRGFVVEFVIAESIFP 82


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 211 SGREPLGASVGADLGVVANTPARPWRTDVEK 303
           SGRE L  +V  D+  +   P   W+T+ E+
Sbjct: 295 SGRENLNRAVQGDIVCIQILPQDQWKTEAEE 325


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 310 RNPSPRQSSRASLEYLLLPQDLHRRRLQAAHAQTLLRS 197
           +NPS +      L Y   P+DL R+RLQ    + + +S
Sbjct: 165 KNPSKKWKVGCKLAYEFFPKDL-RKRLQKLETEDMNKS 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,515,110
Number of Sequences: 5004
Number of extensions: 76302
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)