Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30060
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 33 0.36
05_01_0304 - 2392526-2392828 33 0.36
06_01_0350 + 2534422-2535615 31 1.4
02_01_0166 + 1154695-1156569 31 1.4
01_03_0022 + 11724319-11725381,11725476-11725582 30 1.9
05_06_0182 + 26179720-26179959,26180193-26180260,26180680-261807... 30 2.5
08_02_0763 + 20924057-20924848 29 4.4
05_07_0110 - 27747789-27747897,27748375-27748568,27748811-277488... 29 4.4
09_02_0618 + 11267444-11267652,11268345-11268399,11269554-11270138 28 7.7
05_01_0533 + 4594169-4595065,4598375-4598983 28 7.7
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 28 7.7
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 32.7 bits (71), Expect = 0.36
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = -3
Query: 749 HLGTCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRT-LR 573
HL G RH V SP R+ + RT P R + R PSI +RT +
Sbjct: 240 HLANVVNQGLTQTRHTSVRVSPSVGRTVSATRTTPATR-AGRGMSNAPSIQIPQSRTRFK 298
Query: 572 QKRKLFPDLSAASSGHFG 519
+ P + + FG
Sbjct: 299 RVGATSPGIVTLNDNQFG 316
>05_01_0304 - 2392526-2392828
Length = 100
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 329 RATTVHAKPFSTSVLQGLAGVF-ATTPRSAPTEAPSGS 219
RATTV A+P +T+V G AG + P AP P GS
Sbjct: 40 RATTVKARPATTAVAAGFAGSSNSRQPAPAPASWPHGS 77
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 594 PWNSNAQAEKKTLPGPLGGVFRP 526
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>02_01_0166 + 1154695-1156569
Length = 624
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/59 (40%), Positives = 29/59 (49%)
Frame = -1
Query: 340 RLTREQLLFTRNPSPRQSSRASLEYLLLPQDLHRRRLQAAHAQTLLRSPSRTSYSLRLN 164
R+ LF R PSP S SL LL + RRR +A LLRSPS + + LN
Sbjct: 64 RVRAAAALFRRIPSPTPHSFNSLLAALLRRG--RRRAASALFAALLRSPSASPDAATLN 120
>01_03_0022 + 11724319-11725381,11725476-11725582
Length = 389
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -2
Query: 585 SNAQAEKKTLPGPLGGVFRPLWVTPSTLVFKDEGTIIETVPLPGSG-IGTGFP 430
SN+ A K LPG GG P +P T + + P G G + GFP
Sbjct: 200 SNSLAMAKKLPGAGGGGMTPSSSSPDTATQSESSETTQRQPFMGYGQMANGFP 252
>05_06_0182 +
26179720-26179959,26180193-26180260,26180680-26180719,
26181304-26181399,26181592-26181606
Length = 152
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 271 EYLLLPQDLHRRRLQAAHAQTLLRS 197
E LLLPQD HRR+ H ++++R+
Sbjct: 68 ERLLLPQDQHRRQYCVVHLKSMVRA 92
>08_02_0763 + 20924057-20924848
Length = 263
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 172 VTSRTCATESAEGSGREPLGASVGADLGVVANTPARPWRTD 294
VT+ A + EG G G + G+ A T RP+RTD
Sbjct: 47 VTTTAAAAAAVEGGGGGGGGGAGGSPAAAAAATRRRPFRTD 87
>05_07_0110 -
27747789-27747897,27748375-27748568,27748811-27748888,
27749925-27750064,27750197-27750269
Length = 197
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 193 TESAEGSGREPLGASVGADLGVVANTPARPWRTDVEKGFA*TVVARESVDPKLKERS 363
T E + + P+ S+ D V+ TPA+PW + ++ + RE + K K+ S
Sbjct: 131 TSDTEETSKPPI--SIPDDASVIKETPAQPWDSSIDSS-----LTREEREQKRKQAS 180
>09_02_0618 + 11267444-11267652,11268345-11268399,11269554-11270138
Length = 282
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 225 AWSLRRCRSWGSSKYSSE 278
AW CRSWGSS +S++
Sbjct: 57 AWLGSACRSWGSSSFSTD 74
>05_01_0533 + 4594169-4595065,4598375-4598983
Length = 501
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = -3
Query: 680 FSRSAESIRTPPQMRCSSRSEPYLPSIGFH-GTRTLRQKRKLFPDLSAASSGHFGLPRQH 504
F+R+ SIR+ P ++ + G H T + PD++++ SG F LP Q
Sbjct: 64 FARTIASIRSKPASAAAAAASSSSDGGGDHLATVLAHYAARWLPDVASSPSGRFLLPPQS 123
Query: 503 -SFLKTRERLL 474
+ R+RLL
Sbjct: 124 PTATWIRKRLL 134
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = -3
Query: 767 SMTRALHLGTCCGYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSI 600
S+ + + G+ P+ H P P+ S R PP R S RSE P +
Sbjct: 14 SLLADVEVSHLAGFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,727,541
Number of Sequences: 37544
Number of extensions: 593900
Number of successful extensions: 1920
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1919
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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