Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30060
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    30   2.3  
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AF125972-1|AAD14770.2|  349|Caenorhabditis elegans Hypothetical ...    29   5.2  
Z92780-3|CAB07178.2|  289|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
 Frame = -3

Query: 812  EVTESNLPTSLYLHYSMTRALHLGTCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRC 633
            E+ ++N+   L +H  M      G C GYGY          S E        ++P  + C
Sbjct: 2488 ELCDANITVPLTVHLRMAHPGCGGDCLGYGYNSNGKFTTGWSGECGAGGRG-QSPWYLLC 2546

Query: 632  SSRSEPYLPS--IGFHGTRTLRQKRKLF 555
            ++    YL     G H  RT R +   F
Sbjct: 2547 NTCRSQYLKKTPAGHHQERTRRWREFRF 2574


>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
           protein F45E4.4 protein.
          Length = 2361

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 310 RNPSPRQSSRASLEYLLLPQDLHRRRLQAAHAQTLL-RSPSRTSYSLRL 167
           RN SP  S R S    +LP+  +    +  H QT+L ++ S+T + +++
Sbjct: 102 RNTSPMTSRRCSSALQMLPEVDNLSEAEKEHIQTILEKAESKTPFMIKV 150


>AF125972-1|AAD14770.2|  349|Caenorhabditis elegans Hypothetical
           protein H25P19.1 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 431 GNPVPIPEPGSGT-VSI---IVPSSLKTSVDGVTQSGLKTPPRGP 553
           G P+P PEP     +++     PS L T+  G++     TPP+ P
Sbjct: 260 GTPMPEPEPSRPPRINLKFRFTPSKLGTATPGISIISSPTPPKSP 304


>Z92780-3|CAB07178.2|  289|Caenorhabditis elegans Hypothetical
           protein C45G3.3 protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 190 ATESAEGSGREPLGASVGADLGVVANTPARPWRTDVE 300
           A   A G     L   VGADL V++ +   PWR  +E
Sbjct: 146 AARIARGQAYHHLTLLVGADLQVLSKSLKSPWRDKIE 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,729,394
Number of Sequences: 27780
Number of extensions: 451705
Number of successful extensions: 1326
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)