Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30058
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    29   0.71 
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   8.8  

>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 461 YSLSILQTDTSEVTILCMSLATLNLHIQCYQFLKLYACFIL 339
           +++ ILQT T    +L     T N  +Q  +F +LY+ ++L
Sbjct: 65  FNMHILQTHTGMKFVLFTEKKTTNARLQLQKFYELYSDYVL 105


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 353 HIVLKIGNTVCVG*VLPVTCTK*LPRLCQFVVCLESIYRNVERFVTMIVLVR 508
           ++ L +G  VC   V+P TC     R+    V +  +   +   +T +V+ R
Sbjct: 426 YLYLLMGVLVCPA-VVPATCVMLFSRVSTIAVTVSPVLGIISSIITWLVVAR 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,131
Number of Sequences: 5004
Number of extensions: 51664
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)