Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30058
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0046 + 14411844-14413154,14413753-14413800,14413879-144139...    29   5.2  

>10_08_0046 +
           14411844-14413154,14413753-14413800,14413879-14413992,
           14414218-14414496,14414602-14414715,14415210-14415282,
           14415973-14416073
          Length = 679

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 358 SFKNW*HCMCRLSVASDMHKIVTSLVSVCSMLREY 462
           SF ++ HC+C  ++  +   +VT  + V S +R Y
Sbjct: 245 SFNDYLHCLCHRNLKFNPSALVTEAMDVLSEMRSY 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,308,347
Number of Sequences: 37544
Number of extensions: 261460
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)