Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30058
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19693| Best HMM Match : Sugar_tr (HMM E-Value=0.0002)               30   2.3  
SB_4711| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)                   28   9.4  

>SB_19693| Best HMM Match : Sugar_tr (HMM E-Value=0.0002)
          Length = 512

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -2

Query: 164 DGPYASVVSEVEYRI 120
           DGP+ S VSEVEYRI
Sbjct: 84  DGPFTSTVSEVEYRI 98


>SB_4711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 482 SVQHFYIYSLSILQTDTSEVTILCMSLATLNLHIQCYQFLKLYACFIL 339
           S+QH    +++I  T T  +TI      T+N ++Q Y F  L+   I+
Sbjct: 8   SIQHAVSITITINNTITVTITITITVTITINNNLQQYHFQHLFNTTII 55


>SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)
          Length = 506

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 397 VASDMHKIVTSLVSVCSMLREYI*KC*TLRHNDCIGTKLMLIFII 531
           + S  H++  S   +CS L+  +  C  L+ N   G  L+L+ II
Sbjct: 24  MTSKRHRVFNSEEQICSKLQNVLSLCKDLQRNGYEGDDLVLLAII 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,940,689
Number of Sequences: 59808
Number of extensions: 346300
Number of successful extensions: 497
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)