Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30057
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    27   2.2  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   9.0  

>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 289 TANTETSSFYNQRYNFSFNFNHNDDYTQTHCYTFN*NYHYYCFSQTYDSH 438
           TAN+ +S+ YN   N +  +  +++Y     Y  + NY  Y  S TY S+
Sbjct: 39  TANSYSSNSYNDNNNSNSTYGSSNNYGN---YGSSNNYGSYGASNTYGSN 85


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +1

Query: 532 ARRSSSPSQKQTTKVLKST---TQSSSITPKSATRKATSVAFEPQLGVKN*HPALQ 690
           A +++  S  +T  VL S+   + SS ++ KS +RK T     P+L  K  HP+ Q
Sbjct: 384 ATQAALSSSLETPSVLTSSYKPSSSSKVSAKSVSRKPTGAPAIPKLPPK--HPSRQ 437


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 532 ARRSSSPSQKQTTKVLKSTTQSSSITPKSATRKATS 639
           A  SSS S   ++ ++ STT SSS    S T  ++S
Sbjct: 114 AASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSS 149



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 532 ARRSSSPSQKQTTKVLKSTTQSSSITPKSATRKATS 639
           A  SSS S   ++ V  +T+ SSS TP + +  ++S
Sbjct: 115 ASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSS 150



 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 541 SSSPSQKQTTKVLKSTTQSSSITPKSATRKATSVAFEP 654
           SSS S K ++   KS+++SSS T    T    S ++ P
Sbjct: 154 SSSSSSKSSSSSSKSSSRSSSRTTSHRTTSHKSSSYRP 191


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 529 IARRSSSPSQKQTTKVLKSTTQSSSITPKSATRKATS 639
           +   SSSPS   ++ +  S+  +SSI   S++  +TS
Sbjct: 215 VVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTS 251


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 541 SSSPSQKQTTKVLKSTTQSSSITPKSATRKATS 639
           SSSPS   TT     ++ SSS +  S++  ++S
Sbjct: 141 SSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSS 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,517
Number of Sequences: 5004
Number of extensions: 39940
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)