Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30057
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490...    29   4.1  
05_05_0064 + 22063951-22064462,22066344-22066566                       28   7.1  
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421...    28   9.4  
04_04_0922 - 29439313-29439718,29439842-29440053                       28   9.4  
01_06_1702 - 39295416-39295697,39296411-39296455                       28   9.4  

>06_01_0672 -
           4903126-4903219,4903322-4903430,4903620-4905096,
           4906200-4906538
          Length = 672

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 532 ARRSSSPSQKQTTKVLKSTTQSSSITPKSATRKATSVAFEPQLGVKN 672
           AR ++SP+  +++   K+T      TP++ T      A  P+L   N
Sbjct: 121 ARPAASPATPRSSSATKATLSRPRTTPRTTTPSPAGAAASPRLSSSN 167


>05_05_0064 + 22063951-22064462,22066344-22066566
          Length = 244

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
 Frame = +3

Query: 18  SSFMSDLAIDDISVLRGQKCVDAAAHAITPSPYKADSCVGRCFQNIT---------ITRG 170
           SS +S+ ++DD+ +  G       A  I  SP KA+ C   C   +          IT G
Sbjct: 93  SSCVSECSLDDVDLEAG------LAEVIKGSPEKAERCCRICHLGLETAAAESGAGITLG 146

Query: 171 CGCDGD 188
           C C GD
Sbjct: 147 CSCKGD 152


>06_03_0228 -
           18439659-18440900,18441212-18441736,18441813-18442118,
           18442290-18442877
          Length = 886

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 573 LGGLFLGWARGTSGYGRFGTGF 508
           + G   G+++G+SGYG  GTGF
Sbjct: 22  MDGSDYGFSQGSSGYGGSGTGF 43


>04_04_0922 - 29439313-29439718,29439842-29440053
          Length = 205

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 152 ILEASTDARVSFIRRGGDCMRRCVYALLSS 63
           + EA  DAR S +   GD   R VYAL+SS
Sbjct: 167 LAEAGRDARASSVICLGDLPARFVYALMSS 196


>01_06_1702 - 39295416-39295697,39296411-39296455
          Length = 108

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 660 QLWFESDRRRLTSCTLRCDGTGLSRRLKDLG 568
           Q+W E  R + TS      GT LS RL+D+G
Sbjct: 7   QVWDEMGRTKYTSSAGWGRGTALSTRLEDVG 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,781,264
Number of Sequences: 37544
Number of extensions: 271877
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)