Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30057
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    26   0.44 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    26   0.44 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.2  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 316 YNQRYNFSFNFNHNDDYTQTH 378
           YN  YN ++N N+N++Y + +
Sbjct: 97  YNNNYNNNYNNNYNNNYKKLY 117



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 310 SFYNQRYNFSFNFNHNDDYTQTHCYTFN*NY 402
           S  +  Y +S   N+N++Y   +   +N NY
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNNNYNNNYNNNY 113


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 316 YNQRYNFSFNFNHNDDYTQTH 378
           YN  YN ++N N+N++Y + +
Sbjct: 97  YNNNYNNNYNNNYNNNYKKLY 117



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 310 SFYNQRYNFSFNFNHNDDYTQTHCYTFN*NY 402
           S  +  Y +S   N+N++Y   +   +N NY
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNNNYNNNYNNNY 113


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 721 VTFLLVLAGFTVVLDVNFLLPTVV 650
           +TF +++   T+   VN +LPTV+
Sbjct: 223 ITFYIIIRRKTLFYTVNLILPTVL 246


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 621 CTLRCDGTGLSRRLKDLGGLFLGWARGTSG 532
           C   C G     RL ++  + L W  G+SG
Sbjct: 164 CLENCTGYQQYLRLLEVPQINLEWGEGSSG 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,281
Number of Sequences: 438
Number of extensions: 3347
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)