Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30057
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g42630.1 68414.m04918 zinc knuckle (CCHC-type) family protein...    29   3.4  
At3g21940.1 68416.m02767 receptor protein kinase-related contain...    28   6.0  

>At1g42630.1 68414.m04918 zinc knuckle (CCHC-type) family protein
           contains Pfam profile PF00098: Zinc knuckle
          Length = 154

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = +1

Query: 163 QEAVVATETASSMATAVKTS*IYASKKIPKHSDRRNWFDRCITANTETSSFYNQRYNFSF 342
           ++AV++T+T  S+   +    ++ S  +P HS   N+F +C+ AN   + F  +  N   
Sbjct: 36  KDAVMSTKTVPSVRIDMDNHFMWWS--MP-HSKYYNFFQKCLAANNPYAKFVEK--NKGL 90

Query: 343 NFNHNDDYTQTHC 381
            +     Y Q  C
Sbjct: 91  TYESTTGYYQMRC 103


>At3g21940.1 68416.m02767 receptor protein kinase-related contains
           Pfam profile: PF01657 Domain of unknown function
          Length = 275

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 235 SKKIPKHSDRRNWFDRCITANTETSSFYNQRYNFSF-NFNHNDDYTQTHCYTFN 393
           S + PK+  R  W+D C+   +  +S     Y ++F  +N  D    T+ +  N
Sbjct: 117 SPRCPKNKGRIIWYDNCLLEISPINSLGKIDYEYNFYMYNEKDVNGDTNLFNKN 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,691,836
Number of Sequences: 28952
Number of extensions: 216275
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)