Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30053
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 34 0.11
02_05_1085 + 33989863-33991179 31 0.76
05_02_0157 + 7171791-7172030,7172635-7172667,7172966-7173037,717... 29 3.1
06_01_1164 + 9921555-9922661 29 5.3
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682... 29 5.3
11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094... 28 7.1
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 28 7.1
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 28 7.1
08_01_1081 + 11058119-11059756 28 9.3
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 28 9.3
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -1
Query: 318 HS*PDRPFSESTSLSGYSFWSPFAPSTAHISTCLSIFCAS 199
H+ PD PF+ T +G++ PFAP+ A IS S C++
Sbjct: 596 HNLPDSPFASPTKSAGFAR-DPFAPTEAEISATASTGCSA 634
>02_05_1085 + 33989863-33991179
Length = 438
Score = 31.5 bits (68), Expect = 0.76
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 61 RSPLNIMELKY-WWWMMXXXXXXXXXXXXXDGEV-WEENDHEVLIRSARGAK 210
RSP I+ LK+ WWWMM DG + + E DH + + R A+
Sbjct: 208 RSP-RIVSLKHHWWWMMNTVWDGLDETRDFDGHILFIEEDHYIFPNAYRNAQ 258
>05_02_0157 +
7171791-7172030,7172635-7172667,7172966-7173037,
7175212-7175310,7176135-7176194,7176347-7176463
Length = 206
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +3
Query: 468 TRKCNKNKQVKLAKIRVAEIASKDMGCFENFTIIINEQCLFVDSHLYLSLVP 623
T+K ++++V LAK+++ E+ + +F +++N + LF H L P
Sbjct: 145 TKKQERHRRVGLAKVKLKELILLKVADGLSFFLLVNRRLLFSSKHPTLEGYP 196
>06_01_1164 + 9921555-9922661
Length = 368
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 316 VKLLKPSRKSARELAAMKSHLGANAASMGRCPGPIS*SPTAIRLATKVGAKLG 474
+++ P R+ R + ++ H+ A AAS G G +RL +V A+ G
Sbjct: 279 LRVAGPVRRPLRRVRQLREHVAAAAASRGGAGGRAGAYRRGVRLGRRVVARSG 331
>04_04_0927 +
29467121-29467168,29467518-29467604,29468180-29468269,
29468547-29468741,29469056-29471080,29471208-29471354,
29471520-29471923,29472015-29472144
Length = 1041
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 222 CLSIFCASCASNENFMVILLPHLAICGNYRYR 127
C S+FC+SC SN+ M L P N RYR
Sbjct: 635 CGSMFCSSCTSNKITMAALAPDT----NRRYR 662
>11_06_0711 -
26508228-26508488,26508970-26509084,26509179-26509451,
26509629-26510197,26510489-26510597,26511002-26511544,
26511645-26511763,26511893-26512120,26512199-26512315,
26512410-26512506,26513169-26513569
Length = 943
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +3
Query: 255 DSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSN 434
D + ++R R+L + A E ++T++ C + + + S CS+ G+M+R + + SN
Sbjct: 249 DERNSLR-RQLWIWIHPSALSEGLETLRAACHQQMQESGDTISCCSLEGKMARLEVMGSN 307
Query: 435 S 437
+
Sbjct: 308 A 308
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 178 HGHSPPTPRHLRQLPLPIRGPVLP 107
H H P PRH LPLP+ P P
Sbjct: 747 HQHQPYQPRHTDALPLPLPLPPPP 770
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 327 KTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTR 473
KT++ + + +K S+ +G+ SR KL +SDS D +++K +
Sbjct: 214 KTLKDDRRHAKKGKKDKGSDAKSHGKSSRKIKLGHDSDSDHDDNKKKKK 262
>08_01_1081 + 11058119-11059756
Length = 545
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +3
Query: 228 ICARCLERMDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEM 407
+C + L+R D N ++ K+G+ NC + + T K+ E +
Sbjct: 252 VCTKSLKRSDVDLNQNRLLISCKQGEVFNCPITHLFTG--EETIIVNKNP-DETKETKKK 308
Query: 408 SRTDKLKSNSDSTCDQSRRKT-RKCNKNKQVKLAKIRV 518
+ + K+N D ++ K +K NKN++ + ++V
Sbjct: 309 KKKKRRKNNDDDEEEEPGLKVKKKKNKNEEKERPGLKV 346
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 166 PPTPRHLRQLPLPIRGP 116
PP PR R LP+P RGP
Sbjct: 50 PPPPRPRRALPIPGRGP 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,355,834
Number of Sequences: 37544
Number of extensions: 366556
Number of successful extensions: 1135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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