Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30053
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21)          32   0.44 
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)                   32   0.44 
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)                 32   0.58 
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)            31   1.4  
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)              31   1.4  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   30   1.8  
SB_54691| Best HMM Match : SWIRM (HMM E-Value=0.0033)                  30   2.4  
SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.1  
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_1747| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   5.5  
SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)              28   7.2  
SB_58526| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_4139| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  

>SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21)
          Length = 472

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 330 TIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAK 509
           TI +   RT  +   +  E + +G  SR    ++ S  TC+  +R TR CN+      AK
Sbjct: 189 TITRHTDRTHEHTDGT-HEHATHGRNSRRRNTRTRSTRTCNTLKRNTRTCNRRNTTHKAK 247


>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
          Length = 627

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +3

Query: 306 PANCEVVKTIQKKC-KRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRR----KT 470
           P+  +V K + +KC K TCR+ K +WS+     + S  +K K   D       R    K 
Sbjct: 471 PSGNKVFKCLNQKCGKETCRHCKENWSD-HFGLKCSEIEK-KGEKDLRISYEERMTMAKI 528

Query: 471 RKCNK 485
           RKC+K
Sbjct: 529 RKCHK 533


>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
          Length = 1265

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
 Frame = +3

Query: 318 EVVK--TIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKT-RKCNKN 488
           E+VK   + K+ K     E++  SE ++NG  S  ++LKS+  +T DQS +   +K  K 
Sbjct: 535 EMVKQSAVVKETKPNNVIEETVESETTVNGLESDPERLKSSQGTTVDQSVKDVPKKKKKG 594

Query: 489 KQ 494
           KQ
Sbjct: 595 KQ 596


>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
 Frame = +3

Query: 237 RCLERMDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKR---------TCRY---EKSSW 380
           +C +R D KT  + RK    +    N   V   +K+CK          +C     E+SS 
Sbjct: 110 KCEDRKD-KTRKKKRKHDSSEDSDDNSSDVSAKKKQCKEERKRKRHKLSCESSSCEESSD 168

Query: 381 SECSINGEMSRT---DKLKSNSDSTCDQSRRKTRKCNKNKQVK 500
           SE  +  E ++    D  +S+SDS  D+ RRK +K  K+K+ K
Sbjct: 169 SEKRLKKEKNKEKQRDSSESSSDSEDDRKRRK-KKVKKDKKQK 210


>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
          Length = 1148

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = +3

Query: 237 RCLERMDSKTNI--RSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMS 410
           + L+ M +K NI  +S+K T+KK +  N  +  +++K+CK   R +       +I  E++
Sbjct: 590 KMLQDMVAKLNITIKSQKETMKKLETENSGLAASLEKECKEVERLKGVDEEIVNIKIELN 649

Query: 411 RTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAK 509
                   +     +++ K R   K++Q    K
Sbjct: 650 DVQIKLRETSMELGKTQAKNRSLIKHEQALQGK 682


>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
          Length = 359

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
 Frame = +3

Query: 273 RSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKS----SWSECSINGEMSRTDKLKSNSD 440
           R  + T + G    CE  K   ++C+ T   E +    S SEC    E   T + +S S+
Sbjct: 64  RECESTRECGSTTKCESTK---EECESTSECESTRECESTSECESTTECESTSECESTSE 120

Query: 441 STCDQSRRKTRKCNKNKQ 494
                    TR+C   K+
Sbjct: 121 CASTTECESTRECESTKE 138


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 393  INGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNK 491
            + G+    D++KS     C+Q RR  R C K K
Sbjct: 2130 VTGDKGVNDEVKSREKRDCEQGRRSKRSCIKYK 2162


>SB_54691| Best HMM Match : SWIRM (HMM E-Value=0.0033)
          Length = 809

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = +3

Query: 237 RCLERMDSKTNI--RSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMS 410
           + L+ M +K NI  +S+K T+KK +  N  +  + +K+CK   R +       +I  E++
Sbjct: 663 KMLQDMVAKLNITIKSQKETMKKLETENSGLAASFEKECKEVERLKGVDEEIVNIKIELN 722

Query: 411 RTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAK 509
                   +     +++ K R   K++Q    K
Sbjct: 723 DVQIKLRETSMELGKTQAKNRSLIKHEQALQGK 755


>SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 348 KRTCRYEKSSWSECSINGEMSRTDKLKSNSD 440
           K  C YE S  +  +I GEM+  D+ K N D
Sbjct: 729 KHVCAYEISGMTRGTIGGEMTVNDEYKYNDD 759


>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2463

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +3

Query: 330  TIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQV 497
            T  ++  RTC         C+ + +M+RT    +  + TC    +  R C  ++Q+
Sbjct: 1340 TTHEQMNRTCTTHAKMNRTCTTHEQMNRTYTTHAQMNRTCTTHAQMNRTCTTHEQM 1395



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = +3

Query: 330  TIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLA 506
            T   +  RTC         C+ + +M+RT       + TC    +  R C  ++Q+  A
Sbjct: 1400 TTHAQMSRTCTTHAQMNRTCTTHAQMNRTYTTHVQMNRTCTTHEQMNRTCTTHEQMNRA 1458



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +3

Query: 330  TIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQV 497
            T  ++  RTC         C+ + +M+RT  + +  + TC    +  R C  + Q+
Sbjct: 1490 TTHEQMNRTCTTHAKMNRTCTTHAQMNRTYTIHAQMNRTCTTHAQMNRTCITHAQM 1545


>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1787

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/89 (24%), Positives = 36/89 (40%)
 Frame = +3

Query: 384  ECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAKIRVAEIASKDMGCFENFT 563
            E +I G  S+ D +   + +  D   R   K N +++V  A  RV  +  K     + + 
Sbjct: 1665 EQTIKGSGSQNDVIVVETPALQDIKARADDKANSSERVFSAASRVTTLRIKSENGEQTYI 1724

Query: 564  IIINEQCLFVDSHLYLSLVPSSYIAKYEI 650
            + +N      D H YL  V       Y+I
Sbjct: 1725 LKMNFTDTVADIHSYLDTVRPKNSPPYKI 1753


>SB_1747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/89 (24%), Positives = 36/89 (40%)
 Frame = +3

Query: 384 ECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAKIRVAEIASKDMGCFENFT 563
           E +I G  S+ D +   + +  D   R   K N +++V  A  RV  +  K     + + 
Sbjct: 133 EQTIKGSGSQNDVIVVETPALQDIKARADDKANSSERVFSAASRVTTLRIKSENGEQTYI 192

Query: 564 IIINEQCLFVDSHLYLSLVPSSYIAKYEI 650
           + +N      D H YL  V       Y+I
Sbjct: 193 LKMNFTDTVADIHSYLDTVRPKNSPPYKI 221


>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1507

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/81 (20%), Positives = 32/81 (39%)
 Frame = +3

Query: 264  TNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDS 443
            T   S  +TL +  P +  +     +    +C   +     C  +G ++ +         
Sbjct: 1214 TRNTSHGVTLTRNTPRDVTLTCYTSRDVTLSCNTSRGVILTCYTSGGVTLSCNTSHGVTL 1273

Query: 444  TCDQSRRKTRKCNKNKQVKLA 506
            TC+ SR  T  CN ++ V L+
Sbjct: 1274 TCNTSRDVTLSCNTSRDVTLS 1294


>SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)
          Length = 635

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 516 VAEIASKDMGCFENFTIIINEQCLFVDSHLYLSLVPSSYIAKY 644
           V  +A KD+G       +   + L  D+H  LSL+PS    K+
Sbjct: 15  VTRVARKDIGLLWPVLGVSRARLLITDTHKVLSLLPSCSFRKF 57


>SB_58526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
 Frame = +3

Query: 240 CLERMDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTD 419
           CL+ + + T + + + + + G P N +V     K+   T   EK  WS  +   +  +T 
Sbjct: 73  CLKEIVNATGLENFENSKQIG-PQNTQVKGKEAKRIGLTETIEKERWSHLAKKVDKEQTP 131

Query: 420 KLKSNS-DSTCDQ--SRRKTRKCNKNKQVK 500
             +SNS   T D+  +R+ T K + N++ K
Sbjct: 132 GSRSNSFRITADELIARKFTPKSSLNRRQK 161


>SB_4139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 151 GEVWEENDHEVLIRSARGAKNR 216
           G  WEEND E LI  A+GA+NR
Sbjct: 93  GRRWEENDKEGLI--AQGARNR 112


>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1155

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 225  SICARC--LERMDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSW 380
            S+C RC  +E   S T++   +     G  A+CE+ K ++K     C YE   W
Sbjct: 888  SLCHRCAQVEEQGSCTHLDEERAFT--GTLAHCEIYKVLEKGYCVICVYEVWHW 939


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,109,264
Number of Sequences: 59808
Number of extensions: 424892
Number of successful extensions: 1134
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)