Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30053
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical pr...    33   0.29 
AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear recep...    31   1.2  
AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear horm...    31   1.2  
Z81529-10|CAB04290.1|  338|Caenorhabditis elegans Hypothetical p...    30   1.6  
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AY204193-1|AAO39197.1|  338|Caenorhabditis elegans nuclear recep...    30   1.6  
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      30   1.6  
AC006712-10|AAK39322.2|  273|Caenorhabditis elegans Hypothetical...    29   3.6  
AL110500-21|CAI79283.1|  197|Caenorhabditis elegans Hypothetical...    29   4.8  
U40959-3|AAA81767.2|  445|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AC024776-17|ABN43080.1|  365|Caenorhabditis elegans Hypothetical...    28   6.3  
U93847-1|AAB58269.1|  760|Caenorhabditis elegans elongation fact...    28   8.3  
U93846-1|AAB58268.1|  768|Caenorhabditis elegans elongation fact...    28   8.3  
U10414-7|AAN63383.1|  768|Caenorhabditis elegans Elongation fact...    28   8.3  
U10414-6|AAN63384.1|  760|Caenorhabditis elegans Elongation fact...    28   8.3  

>Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical
           protein R07E5.6 protein.
          Length = 443

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
 Frame = +3

Query: 243 LERMDSKTNIRSRKLTLKKGDPANCEVVKTIQKKC----KRTCRYEKSSWSECSINGEMS 410
           +++ D     +  K  + K +    EV +  +KK     KR    +K+   + SIN EMS
Sbjct: 253 IKKKDEDEKAKKEKERIDKEEKIKKEVEEAEKKKKEEKEKRRKEVKKNREEQLSINPEMS 312

Query: 411 RTDKLKSNSDSTC-DQSRRKTRKCNKNKQV 497
           R DK     + +C D+  +  +K  K + V
Sbjct: 313 RNDKKDVVEEKSCLDKGAKDAQKKKKQQDV 342


>AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear receptor
           NHR-92 protein.
          Length = 362

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 219 GMSICARCLERMDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 371
           G  +C+ C      +T +R  +   K+ +  NC +V TI+  CK+ CRY K
Sbjct: 26  GGVVCSAC-SAFFRRTVVRGHEYRCKQME--NCLIVSTIRNMCKK-CRYTK 72


>AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 92 protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 219 GMSICARCLERMDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEK 371
           G  +C+ C      +T +R  +   K+ +  NC +V TI+  CK+ CRY K
Sbjct: 18  GGVVCSAC-SAFFRRTVVRGHEYRCKQME--NCLIVSTIRNMCKK-CRYTK 64


>Z81529-10|CAB04290.1|  338|Caenorhabditis elegans Hypothetical
           protein F35E8.12 protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/87 (20%), Positives = 43/87 (49%)
 Frame = +3

Query: 351 RTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAKIRVAEIA 530
           RT    +S  ++  ++G     DKL+++ D+  D+  +  + CN  +   + +I +  I+
Sbjct: 83  RTPVNRRSENNQTILSGLEKAYDKLENSRDNVFDRKNKIPKYCNHQELDDMFEIDIKLIS 142

Query: 531 SKDMGCFENFTIIINEQCLFVDSHLYL 611
           +  +  FE+ + + N Q   + +H  +
Sbjct: 143 THFIQFFESKSSLENNQNKVLSTHFII 169


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 372  SSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKL 503
            S W  CS+     R  + +   +++C +   +T +CN N  ++L
Sbjct: 1042 SEWGPCSVTCGSGRRVRTRGCQEASCPEQHIQTEECNLNSCLEL 1085


>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 372  SSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKL 503
            S W  CS+     R  + +   +++C +   +T +CN N  ++L
Sbjct: 1042 SEWGPCSVTCGSGRRVRTRGCQEASCPEQHIQTEECNLNSCLEL 1085


>AY204193-1|AAO39197.1|  338|Caenorhabditis elegans nuclear receptor
           NHR-108 protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/87 (20%), Positives = 43/87 (49%)
 Frame = +3

Query: 351 RTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAKIRVAEIA 530
           RT    +S  ++  ++G     DKL+++ D+  D+  +  + CN  +   + +I +  I+
Sbjct: 83  RTPVNRRSENNQTILSGLEKAYDKLENSRDNVFDRKNKIPKYCNHQELDDMFEIDIKLIS 142

Query: 531 SKDMGCFENFTIIINEQCLFVDSHLYL 611
           +  +  FE+ + + N Q   + +H  +
Sbjct: 143 THFIQFFESKSSLENNQNKVLSTHFII 169


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 372  SSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKL 503
            S W  CS+     R  + +   +++C +   +T +CN N  ++L
Sbjct: 1042 SEWGPCSVTCGSGRRVRTRGCQEASCPEQHIQTEECNLNSCLEL 1085


>AC006712-10|AAK39322.2|  273|Caenorhabditis elegans Hypothetical
           protein Y119C1B.1 protein.
          Length = 273

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = +3

Query: 294 KKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTR 473
           K   P N +   ++  K K T + +K   S+ + +       K+KS+ D     S RKT 
Sbjct: 189 KPSKPENDKSYYSVPSKDKSTSKKQKMLRSDMADSASPKSLKKIKSSKD-PLRSSSRKTT 247

Query: 474 KCNKNKQVKLAKIRVAEIASK 536
           K +K    + +K  +A   SK
Sbjct: 248 KPSKKLSGRSSKKNLASKKSK 268


>AL110500-21|CAI79283.1|  197|Caenorhabditis elegans Hypothetical
           protein Y87G2A.20 protein.
          Length = 197

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +3

Query: 294 KKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTR 473
           KKG  AN    KT  K  KR  + +K  W++ +      R    K+   +  D ++RK +
Sbjct: 24  KKGGKAN----KTKTKATKRKAQMKKK-WTKTAQKKRKERKKADKAKKKTKKDAAKRKKK 78

Query: 474 KCNKNKQVKLAK 509
             +K K+ K  K
Sbjct: 79  SKDKKKKQKAQK 90


>U40959-3|AAA81767.2|  445|Caenorhabditis elegans Hypothetical
           protein B0310.3 protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
 Frame = +3

Query: 237 RCLERMDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRT 416
           R L+    K    +RK+ ++K  P + E+     K  +     +        + G     
Sbjct: 127 RILKEAHFKAQQLNRKMVVQKSCPPDHEIKPVPSKFYQFDAITDFGFGGPVLLVGMQKDV 186

Query: 417 DKLKSNSDSTCDQSRRKTRK----CNKNKQVKLAKIRVAEIASK 536
           + +K  +       R+K RK    CN  K  KLA+I VA+I  K
Sbjct: 187 EVMKLETKEKARSGRKKNRKSKYKCNMYKMTKLAQI-VAKIPKK 229


>AC024776-17|ABN43080.1|  365|Caenorhabditis elegans Hypothetical
           protein Y41D4B.27 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 219 GMSICARCLERMDSKTNIRSRKLTLKKGDPANC-EVVKTIQKKCKRTCRYEK 371
           G+ +C+ C      +T  + R      G+P NC E+V T    CK +CR+ K
Sbjct: 18  GVEVCSAC-SAFFRRTVFKKRNFRCW-GEPVNCCEIVSTGSAFCK-SCRFAK 66


>U93847-1|AAB58269.1|  760|Caenorhabditis elegans elongation
           factor-2 kinase EFK-1B isoform protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 306 PANCEVVKTIQKKCKRTCRYEKSSW--SECSINGEMSRTDKLKSNSDSTCDQSRRKTRKC 479
           P    VV+ + + C      E+  +  SE S N + SR  ++  ++ S+ D+S  + RKC
Sbjct: 388 PECIPVVEQLCEPCSEDEEDEEEDYPRSEKSGNSQKSRRSRMSISTRSSGDESASRPRKC 447


>U93846-1|AAB58268.1|  768|Caenorhabditis elegans elongation
           factor-2 kinase EFK-1A isoform protein.
          Length = 768

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 306 PANCEVVKTIQKKCKRTCRYEKSSW--SECSINGEMSRTDKLKSNSDSTCDQSRRKTRKC 479
           P    VV+ + + C      E+  +  SE S N + SR  ++  ++ S+ D+S  + RKC
Sbjct: 388 PECIPVVEQLCEPCSEDEEDEEEDYPRSEKSGNSQKSRRSRMSISTRSSGDESASRPRKC 447


>U10414-7|AAN63383.1|  768|Caenorhabditis elegans Elongation factor
           kinase protein1, isoform a protein.
          Length = 768

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 306 PANCEVVKTIQKKCKRTCRYEKSSW--SECSINGEMSRTDKLKSNSDSTCDQSRRKTRKC 479
           P    VV+ + + C      E+  +  SE S N + SR  ++  ++ S+ D+S  + RKC
Sbjct: 388 PECIPVVEQLCEPCSEDEEDEEEDYPRSEKSGNSQKSRRSRMSISTRSSGDESASRPRKC 447


>U10414-6|AAN63384.1|  760|Caenorhabditis elegans Elongation factor
           kinase protein1, isoform b protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 306 PANCEVVKTIQKKCKRTCRYEKSSW--SECSINGEMSRTDKLKSNSDSTCDQSRRKTRKC 479
           P    VV+ + + C      E+  +  SE S N + SR  ++  ++ S+ D+S  + RKC
Sbjct: 388 PECIPVVEQLCEPCSEDEEDEEEDYPRSEKSGNSQKSRRSRMSISTRSSGDESASRPRKC 447


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,689,551
Number of Sequences: 27780
Number of extensions: 315407
Number of successful extensions: 935
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)