Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30053
(762 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09900.1 68417.m01622 hydrolase, alpha/beta fold family prote... 32 0.36
At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containi... 32 0.48
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 31 1.1
At1g36390.2 68414.m04521 co-chaperone grpE family protein simila... 30 1.9
At1g36390.1 68414.m04520 co-chaperone grpE family protein simila... 30 1.9
At3g62470.1 68416.m07018 pentatricopeptide (PPR) repeat-containi... 29 4.5
At5g08720.1 68418.m01036 expressed protein 28 5.9
At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type pept... 28 5.9
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 28 5.9
At3g30460.1 68416.m03854 zinc finger (C3HC4-type RING finger) fa... 28 7.8
At2g22795.1 68415.m02704 expressed protein 28 7.8
>At4g09900.1 68417.m01622 hydrolase, alpha/beta fold family protein
similar to ethylene-induced esterase [Citrus sinensis]
GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
serpentina] GI:6651393, SP|Q40708 PIR7A protein {Oryza
sativa}; contains Pfam profile PF00561: hydrolase,
alpha/beta fold family
Length = 349
Score = 32.3 bits (70), Expect = 0.36
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = +3
Query: 15 QRPILPDS*HNIHQVALSAEHHGAQVLVVDDGRTGPLIGSGSCRR 149
QR +L D N+H+ ALS H AQV DG IGS S RR
Sbjct: 31 QRKLLADE-ENLHRRALSMAIHQAQVSQRFDGSMSRRIGSTSSRR 74
>At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q99615 DnaJ homolog
subfamily C member 7 (Tetratricopeptide repeat protein
2) {Homo sapiens}; contains Pfam profile PF00515: TPR
Domain
Length = 721
Score = 31.9 bits (69), Expect = 0.48
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +1
Query: 334 SRKSARELAAMKSHLGANAASMGRCPGPIS*SPTAIRLATKVGAKLGNVTRISKSS---L 504
S+ S AA S +S + G S + R +++VGAK GN+ R S +S
Sbjct: 94 SKSSNLSSAAKSSKSSTTPSSAAQFGGSYSPARAQSRASSQVGAKTGNIIRPSSNSASVT 153
Query: 505 LR*GSQKSPVRTWAALKIL 561
+ KS V + +LKIL
Sbjct: 154 TKPSGNKSSVSSKQSLKIL 172
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/99 (19%), Positives = 43/99 (43%)
Frame = +3
Query: 243 LERMDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDK 422
LE D K ++ ++ K E+++ ++ +E+ + ++GE ++K
Sbjct: 1599 LETSDQKKGVKEDEVVGK------AEIIEDEYDSSRKIHEHEERMSDKLEMHGEEEMSEK 1652
Query: 423 LKSNSDSTCDQSRRKTRKCNKNKQVKLAKIRVAEIASKD 539
L S ++++ R K++ K+R E+ KD
Sbjct: 1653 LAEEETSDGEEAKEGNRAGKKSRDDGFGKVRKIEVQRKD 1691
>At1g36390.2 68414.m04521 co-chaperone grpE family protein similar
to co-chaperone CGE1 precursor isoform b [Chlamydomonas
reinhardtii] GI:15384279; contains Pfam profile PF01025:
co-chaperone GrpE
Length = 279
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/107 (23%), Positives = 48/107 (44%)
Frame = +3
Query: 234 ARCLERMDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSR 413
A ++ D KT IRS K L GD + ++T+ CK K S++ +++
Sbjct: 67 ANSKQQADVKTLIRSYKQALLNGDETSVTEIETM--FCKIEKEKNKMDQKVLSLSMKIAS 124
Query: 414 TDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAKIRVAEIASKDMGCFE 554
++K + D +R+K K + + AK+++ + + FE
Sbjct: 125 EKEMKIRLQADFDNTRKKLDKDRLSTESN-AKVQILKSLLPIIDSFE 170
>At1g36390.1 68414.m04520 co-chaperone grpE family protein similar
to co-chaperone CGE1 precursor isoform b [Chlamydomonas
reinhardtii] GI:15384279; contains Pfam profile PF01025:
co-chaperone GrpE
Length = 279
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/107 (23%), Positives = 48/107 (44%)
Frame = +3
Query: 234 ARCLERMDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSR 413
A ++ D KT IRS K L GD + ++T+ CK K S++ +++
Sbjct: 67 ANSKQQADVKTLIRSYKQALLNGDETSVTEIETM--FCKIEKEKNKMDQKVLSLSMKIAS 124
Query: 414 TDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAKIRVAEIASKDMGCFE 554
++K + D +R+K K + + AK+++ + + FE
Sbjct: 125 EKEMKIRLQADFDNTRKKLDKDRLSTESN-AKVQILKSLLPIIDSFE 170
>At3g62470.1 68416.m07018 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 599
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +1
Query: 163 EENDHEVLIRSARG-AKNREACRYV 234
++N + VLIR G K+REACRY+
Sbjct: 507 DDNSYTVLIRGLIGEGKSREACRYL 531
>At5g08720.1 68418.m01036 expressed protein
Length = 719
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/81 (20%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +3
Query: 306 PAN-CEVVKTIQK---KCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTR 473
P+N C + I+K K +C+ E SE + + +++ + N+D DQ++++ R
Sbjct: 467 PSNLCAIRDYIEKRGEKSSESCKLETCQVSEETCSSSRAKSVETVYNNDDGSDQTKQRRR 526
Query: 474 KCNKNKQVKLAKIRVAEIASK 536
+ +++ K + + S+
Sbjct: 527 IPGLQRDIEVLKSEILKFISE 547
>At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type
peptidyl-prolyl cis-trans isomerase, putative contains
Pfam profile: PF00254, FKBP-type peptidyl-prolyl
cis-trans isomerases
Length = 694
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 264 TNIRSRKLTLKKGDPANCEVVKTIQKK 344
T ++RK TL+ G+PA CE KT + K
Sbjct: 426 TRSKARKSTLESGEPAKCE--KTFEAK 450
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +3
Query: 348 KRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAKIRVAEI 527
KR R + S S + SR + +SD + D S+RK+ KN+ K R +
Sbjct: 800 KRKSRSRRRSVSPSPVR---SRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSRRRHV 856
Query: 528 ASK 536
+S+
Sbjct: 857 SSR 859
>At3g30460.1 68416.m03854 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 147
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 66 SAEHHGAQVLVVDDGRTGPLIG-SGSCRRWRGVGGE*P*SSHSXXXXXXXXXGMSICARC 242
S +HG D G ++G S SC RW G E P + G+ +CA C
Sbjct: 43 SRSNHGVNTFGSYDEIFGLVLGNSSSCTRWLNAGEELPVVEFT--AEEMMERGLVVCAIC 100
Query: 243 LERM 254
E +
Sbjct: 101 REEL 104
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +3
Query: 252 MDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKS 431
+D K NI + KGD A+ EVV ++K + EK + I E +KS
Sbjct: 288 IDEKANIEEARENNYKGDDASSEVVHESEEKTSESENSEKVE-DKSGIKTEEVEDSVIKS 346
Query: 432 NSDSTCD 452
+T D
Sbjct: 347 VLPNTTD 353
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,779,476
Number of Sequences: 28952
Number of extensions: 291331
Number of successful extensions: 881
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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