Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30052
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   101   9e-23
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    99   2e-22
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    27   2.2  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    27   2.2  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    25   5.2  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   5.2  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   5.2  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    25   6.8  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   9.0  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   9.0  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  101 bits (241), Expect = 9e-23
 Identities = 44/82 (53%), Positives = 59/82 (71%)
 Frame = +2

Query: 17  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 196
           M  V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 197 LRHIYIRSPVGVKTVTKIFVGA 262
            RHIY+R  VGV  + K++ G+
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGS 82



 Score = 58.4 bits (135), Expect = 6e-10
 Identities = 27/54 (50%), Positives = 37/54 (68%)
 Frame = +1

Query: 256 GRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 417
           G    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RDLDRI
Sbjct: 81  GSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =   99 bits (238), Expect = 2e-22
 Identities = 43/82 (52%), Positives = 59/82 (71%)
 Frame = +2

Query: 17  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 196
           M  V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 197 LRHIYIRSPVGVKTVTKIFVGA 262
            RHIY+R  VGV  + K++ G+
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGS 82



 Score = 58.4 bits (135), Expect = 6e-10
 Identities = 27/54 (50%), Positives = 37/54 (68%)
 Frame = +1

Query: 256 GRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 417
           G    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RDLDRI
Sbjct: 81  GSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 226 WSQDCHQDLCGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQD 369
           W+   +Q+L   K N  +          +   AL S + LKL E++QD
Sbjct: 383 WNSTVYQELLNLKSNNSSVDGVKTRRQLLEENALLSHKVLKLTEEIQD 430


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 171 GSMCVVLPSFVIFTFAHLLESRLSPRSLWA 260
           GSM   + SF+I  F  +   + + R++WA
Sbjct: 348 GSMAFTILSFIIINFTGITAMQANARTIWA 377


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 253 KDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQL 146
           +D+G +L+ N+ +N+  TK+ S   I+       QL
Sbjct: 110 QDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 230 VKTVTKIFV--GANVMELHLHISAGHQAVLHARLCNRW 337
           + T+ ++F   G +V +L+L + + H   L +R C +W
Sbjct: 272 ISTINQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQW 309


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 132 QLASKSWLRMTLIGSMCVVL 191
           +L SKSWL +  +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 196 PSSYLHSLTCWSQDCHQDLCGRKRNGVTPSHFCRSSGSIARKALQSL 336
           P+S L +  C+S      +     N ++P H+C  S   + +A + L
Sbjct: 145 PTSALLAEICYSYGQRAYIGKCNMNNLSPDHYCEKSAESSLEATRQL 191


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 180 CVVLPSFVIFTFAHLLESRL 239
           C+V  S V+F  AH+ E RL
Sbjct: 176 CIVSSSLVLFDNAHVTEGRL 195


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -2

Query: 405 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 313
           VSS  C E   T     L+ +N ++C+  LQS+ C
Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,702
Number of Sequences: 5004
Number of extensions: 36734
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)