Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30052
(523 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical pr... 95 3e-20
AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal pro... 95 3e-20
AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic in... 28 3.5
U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical p... 27 8.1
Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical
protein T05F1.3 protein.
Length = 146
Score = 95.1 bits (226), Expect = 3e-20
Identities = 47/97 (48%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
Frame = +2
Query: 20 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 199
R+ ++KDV+Q + K++A LKK+GKVKVPE DLVK KELAP DPDWFY R A++
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62
Query: 200 RHIYIRSPVGVKTVTKIFVG---ANVMELHLHISAGH 301
RH+Y R P G+ K++ G V H SAG+
Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGN 98
Score = 68.5 bits (160), Expect = 3e-12
Identities = 34/55 (61%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Frame = +1
Query: 256 GRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 417
G KR GV P+HF S+G+ RKA+Q LE +K VEK DG GRIL+ QGR+DLDRI
Sbjct: 81 GNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135
>AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal
protein S19 protein.
Length = 146
Score = 95.1 bits (226), Expect = 3e-20
Identities = 47/97 (48%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
Frame = +2
Query: 20 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 199
R+ ++KDV+Q + K++A LKK+GKVKVPE DLVK KELAP DPDWFY R A++
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62
Query: 200 RHIYIRSPVGVKTVTKIFVG---ANVMELHLHISAGH 301
RH+Y R P G+ K++ G V H SAG+
Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGN 98
Score = 68.5 bits (160), Expect = 3e-12
Identities = 34/55 (61%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Frame = +1
Query: 256 GRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 417
G KR GV P+HF S+G+ RKA+Q LE +K VEK DG GRIL+ QGR+DLDRI
Sbjct: 81 GNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135
>AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic
initiation factor protein3.E protein.
Length = 432
Score = 28.3 bits (60), Expect = 3.5
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Frame = +2
Query: 119 DLVKTARFKELAPYDPDWFYVRCAAILRH----IYIRSPVGVKTVTKIFVGANVMELHLH 286
DL+K + + P+D +W V A L H +Y P G + ++F+ +
Sbjct: 188 DLLKLRAYIDANPFDTEWELVTQRAWLMHWALFVYYNYPKGRDEIIEMFLNQQPYLNAIQ 247
Query: 287 ISAGH--QAVLHARLCNRWRH*SLLRKFRTVVAFSPHKVDETLTESL 421
+ A H + + A + ++ R + L+ V+ H + +T+ L
Sbjct: 248 VLAPHLLRYLAVAVVTSKSRQKNSLKDLVKVIDIERHSYKDPVTDFL 294
>U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical
protein C28G1.5 protein.
Length = 101
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 214 SLTCWSQDCHQDLCGRKRNGVTPSHFCRSSGSIARKAL-QSLEALKLVEKVQD 369
+LTC CH+ + N FCR+ +I + + L+ L+E ++D
Sbjct: 24 NLTCGHALCHKCITAMVNNSTVECPFCRTVTNIVNNDITKLLKNFALIEVIED 76
>Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical
protein ZK1320.6 protein.
Length = 539
Score = 27.1 bits (57), Expect = 8.1
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Frame = +1
Query: 223 CWSQDCHQDLCGRKRNGVTPSHFC---RSSGSIARKALQSLEA----LKLVEKVQDGGRI 381
C CH C G S FC R++ I LQ+L+ L+L+EK+ DGG +
Sbjct: 28 CGHTICHN--CAISIAGRNSSIFCPFDRTATQIPGGDLQNLKKNFALLELLEKIADGGGL 85
Query: 382 LTTQG 396
L G
Sbjct: 86 LEKSG 90
>Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -1
Query: 265 VCAHKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 140
+ D+GD S + V +DGS H++ I++I +++
Sbjct: 490 ISRRSDMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 531
>Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -1
Query: 265 VCAHKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 140
+ D+GD S + V +DGS H++ I++I +++
Sbjct: 719 ISRRSDMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 760
>Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -1
Query: 265 VCAHKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 140
+ D+GD S + V +DGS H++ I++I +++
Sbjct: 490 ISRRSDMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 531
>Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -1
Query: 265 VCAHKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 140
+ D+GD S + V +DGS H++ I++I +++
Sbjct: 719 ISRRSDMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 760
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,910,975
Number of Sequences: 27780
Number of extensions: 220076
Number of successful extensions: 581
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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