Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30050
         (735 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    23   1.9  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    23   1.9  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    23   1.9  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   3.4  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   3.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   5.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.9  

>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 388 QNITICQIISDKFQNATTDPMGSS 459
           Q + +C +++  FQ  T+ P G S
Sbjct: 12  QAVWVCMVLAVVFQEITSSPAGRS 35


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 388 QNITICQIISDKFQNATTDPMGSS 459
           Q + +C +++  FQ  T+ P G S
Sbjct: 12  QAVWVCMVLAVVFQEITSSPAGRS 35


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 388 QNITICQIISDKFQNATTDPMGSS 459
           Q + +C +++  FQ  T+ P G S
Sbjct: 12  QAVWVCMVLAVVFQEITSSPAGRS 35


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 190 YPSHRIF*SRSIVPL 146
           YPSH I+ S +++PL
Sbjct: 347 YPSHSIYPSSNLMPL 361


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 581 TVKGLSSDLVDEEADGEVRDREHGAMAIEIGNTETD 474
           +V+ L S   DEE +  + DR+     I + + +TD
Sbjct: 15  SVESLLSKKEDEEVEHRLSDRDDDDENITVDDDDTD 50


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 78  SGRNSRIKAAARPGAHQHQTNARRR 4
           SGR+ R +   +PGA Q    A  +
Sbjct: 205 SGRSPRTRRVKKPGAKQGAPTAEEK 229


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 623 VRAPRWGCHR 652
           V  PRWGC R
Sbjct: 50  VTTPRWGCAR 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,308
Number of Sequences: 336
Number of extensions: 4575
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)