Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30050
(735 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44115| Best HMM Match : NIF3 (HMM E-Value=8.7e-06) 31 0.97
SB_9157| Best HMM Match : Fumarate_red_C (HMM E-Value=1.8) 31 0.97
SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79) 29 3.0
SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_41787| Best HMM Match : Frizzled (HMM E-Value=0) 29 3.9
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84) 29 5.2
SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5) 29 5.2
SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07) 28 6.8
SB_39408| Best HMM Match : Cadherin (HMM E-Value=0) 28 6.8
SB_57664| Best HMM Match : PC_rep (HMM E-Value=3.5e-14) 28 9.0
SB_55907| Best HMM Match : Extensin_2 (HMM E-Value=0.73) 28 9.0
SB_39416| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_3489| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_44115| Best HMM Match : NIF3 (HMM E-Value=8.7e-06)
Length = 154
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 621 AFVPHGGAATALLIVSLCSGCAASILAAIVVDVF 722
A+ P T L V+LC+G AS+L + DV+
Sbjct: 80 AYAPSKAKDTLLSTVALCAGSGASVLQGVAADVY 113
>SB_9157| Best HMM Match : Fumarate_red_C (HMM E-Value=1.8)
Length = 294
Score = 31.1 bits (67), Expect = 0.97
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +3
Query: 543 FFINKIGRKTLYCGIMFVCGVATVGAAFVP--HGGAATALLIV-SLCSGCAASILAAIVV 713
F + KIGR+ +C IM G+ V VP + T + I+ C A S +
Sbjct: 121 FLLQKIGRRLTHCSIMLTGGLICVLVLVVPKEYTSVVTGIAIMGKFCDTAAFSTIYLYTS 180
Query: 714 DVFP 725
+++P
Sbjct: 181 ELYP 184
>SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1627
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 608 GNTTDEHYSTVKGLSSDLVDEEADGEVRDREH 513
G E Y +K +D + + A GEVRD+EH
Sbjct: 314 GKLCTEFYDVMKKKITDAITKRAAGEVRDKEH 345
>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
Length = 1091
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 32 CAPGLAAALILLFLPESPKFLLANKGPEAALPVLATMYEWNYGS 163
C PG + L+LL ++ + P A+LP L + W+ S
Sbjct: 692 CQPGSSPVLLLLIRMQTQAMSKGSSAPPASLPPLQNLPSWSRSS 735
>SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = -2
Query: 662 YEQGGGSPTVGHERCSHRGNTTDEHYSTVKGLSSDLVDEEADGEVRDREHGAMAIEIGNT 483
Y Q PT + + +T + +ST +G +L + + D ++GA IE GN
Sbjct: 55 YTQHEPIPTTSLLQPHNETSTFNSRFSTWRGNKKNLFANSSSIDPDDPKNGAYVIEEGND 114
Query: 482 ETDTSARQLDPIGS 441
+ D +D G+
Sbjct: 115 DDDFDDDDVDNDGT 128
>SB_41787| Best HMM Match : Frizzled (HMM E-Value=0)
Length = 542
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 241 EGHCPMFKPPLLR---CVFISHTSMFAVFMVSSGLYVWVPDILNS 366
E CP + PL + VF+ MF + ++SG ++W LNS
Sbjct: 478 EVSCPPYPVPLQKPDFMVFMVKYLMFLIVGITSGFWIWSSKTLNS 522
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 715 STTMAANIEAAHPEHSETMSRAVAAPPWGTNAAPTVATPQTNII 584
+TT AA +EA E + T S A T A+ T+ TP + I
Sbjct: 1226 TTTTAAMVEATTTEAAVTASTASVVTTTATIASSTITTPSLSAI 1269
>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
Length = 1737
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 221 GGFVGAVKDIAQCSSHPSLDVFSSHIHLCLPFLWYRVVCTCGYRIS 358
GG +G Q SS+ + S + LC PFL +CGY S
Sbjct: 24 GGSLGEFHQAVQSSSNNTRKCGLSTMRLCSPFLLALKDLSCGYHTS 69
>SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5)
Length = 563
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 68 FLPESPKFLLANKGPEAALPVLATMYEWNYGSGLKYPVGRISTSNLDAQRVGGFV 232
++PESP+F ++ E AL +L T+ + N G+ P G++ + G F+
Sbjct: 305 YIPESPRFCISAGDHERALSILKTIAKDNKGT---LPEGKLVAFDTPKVHRGNFL 356
>SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 333 SVRVGTGYPQQYSARLDRSEHNHMPDYIG*IPKCNHGPNG 452
S R T +P+ Y LD + Y+G IP +G NG
Sbjct: 422 SFRYRTLFPELYPLELDYKHRRAIRTYLGGIPVVLYGENG 461
>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
Length = 1306
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 333 SVRVGTGYPQQYSARLDRSEHNHMPDYIG*IPKCNHGPNG 452
S R T +P+ Y LD + Y+G IP +G NG
Sbjct: 1191 SFRYRTLFPELYPLELDYKHRRAIRTYLGGIPVVLYGENG 1230
>SB_39408| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2389
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 64 AVPTRKPKISAGQ-QGPGSGITGFGYYVRVELWIWIKISGGKDIDVK 201
A+ + PK+ Q + P S I+G YY R + + + GG+ +D++
Sbjct: 1320 ALKKKDPKLPHDQFEPPLSSISGANYYDRRTQTMMVVLRGGEPVDIR 1366
>SB_57664| Best HMM Match : PC_rep (HMM E-Value=3.5e-14)
Length = 119
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 662 YEQGGGSPTVGHERCSHRGNTTDEHYSTVKGLSSDLV 552
Y++GGG +G +H GN T+ +K ++D+V
Sbjct: 24 YQEGGGLYALGLIHVNHGGNITEYLLQQLKEATTDMV 60
>SB_55907| Best HMM Match : Extensin_2 (HMM E-Value=0.73)
Length = 469
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 645 QPHRGARTLLPPWQHHRRTLFHSKG 571
Q RG T + P HHR T HS+G
Sbjct: 113 QRGRGIPTSIRPLHHHRHTYQHSRG 137
>SB_39416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 738
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 662 YEQGGGSPTVGHERCSHRGNTTDEHYSTVKGLSSDLV 552
Y++GGG +G +H GN T+ +K ++D+V
Sbjct: 172 YQEGGGLYALGLIHVNHGGNITEYLLQQLKEATTDMV 208
>SB_3489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 43
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 68 FLPESPKFLLANKGPEAALPVLATMYEWN 154
+LPES +FLLA E A+ VL M E N
Sbjct: 1 WLPESCRFLLAAGEREGAIQVLRDMCEMN 29
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,167,213
Number of Sequences: 59808
Number of extensions: 634266
Number of successful extensions: 1873
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1871
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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