Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30050
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.98 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.1  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 269 PSLD--VFSSHIHLCLPFLWYRVVC 337
           PS++  VF+S   LC+PF  Y  VC
Sbjct: 135 PSVECIVFNSGTILCVPFTTYTPVC 159


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 95  LANKGPEAALPVLATMYEWNY 157
           + N GPEAA    A  Y +NY
Sbjct: 243 IVNNGPEAAKMAKAFTYTYNY 263


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 351 RYPHVQTTRYHKNGKHRCM*DENTSKE 271
           RYP+   T Y+KN    C  ++  +K+
Sbjct: 437 RYPNASVTPYNKNYTKFCSTEKRLTKQ 463


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 287 SSHIHLCLPFLWYRVVCTCGYRISSTVFCATRPIRT 394
           S H  L L ++ +  +   G  +   +FCA + +RT
Sbjct: 46  SLHYLLALLYILFTFLALLGNGLVIWIFCAAKSLRT 81


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 710  NNGS*YRGRTS*AQRDYEQGGGSPTVGHE 624
            N+G+   G  + +Q+  +Q  G P +G E
Sbjct: 1565 NSGNNRSGEQANSQQQQQQQSGEPVIGME 1593


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 279 SKEGWLEHWAMSFTAPTNPP 220
           SK   + HW MS  A + PP
Sbjct: 377 SKNPAMGHWQMSCVACSPPP 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,003
Number of Sequences: 438
Number of extensions: 5884
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)