Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30049
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical...   145   3e-35
AC024878-1|AAK85513.1|  173|Caenorhabditis elegans Hypothetical ...    60   2e-09
AF016450-12|AAB65989.1|  278|Caenorhabditis elegans Hypothetical...    49   4e-06
U00067-6|AAL08037.1|  167|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z71259-4|CAA95788.2|  501|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81073-6|CAN86904.2|  215|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81073-5|CAE17804.3|  242|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of...    29   3.7  
J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein ( C.ele...    29   3.7  
AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z81081-4|CAB03092.2|  491|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AL023825-1|CAA19442.2|  491|Caenorhabditis elegans Hypothetical ...    28   8.7  
AF052060-1|AAC06226.1|  491|Caenorhabditis elegans Olf-1/EBF tra...    28   8.7  

>AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical
           protein K07H8.3 protein.
          Length = 182

 Score =  145 bits (352), Expect = 3e-35
 Identities = 64/84 (76%), Positives = 74/84 (88%)
 Frame = +1

Query: 253 LLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVK 432
           L+CLPENYQMKYYFYH LSWPQLSY+AED KG++VGYVLAKMEED  +  HGHITSLAVK
Sbjct: 19  LMCLPENYQMKYYFYHALSWPQLSYIAEDHKGNVVGYVLAKMEEDPGEEPHGHITSLAVK 78

Query: 433 RSHRRLGLAQKLMNQASLAMVECF 504
           RS+RRLGLA K+M+Q + AMVE +
Sbjct: 79  RSYRRLGLANKMMDQTARAMVETY 102



 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 38/59 (64%), Positives = 48/59 (81%)
 Frame = +3

Query: 504 SGKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADGEDAYSMMRDLSAFAVDNKTD 680
           + KYVSLHVR SNRAALNLY N+L F+I++ EPKYYADGEDAY+M RDL+ +A +   +
Sbjct: 103 NAKYVSLHVRVSNRAALNLYKNTLKFEIVDTEPKYYADGEDAYAMRRDLAKWAEERNIE 161



 Score = 31.9 bits (69), Expect = 0.53
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +2

Query: 200 MNIRCARPSDLMNMQHCN 253
           MNIRCAR  DLM+MQ+ N
Sbjct: 1   MNIRCARVDDLMSMQNAN 18


>AC024878-1|AAK85513.1|  173|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.3 protein.
          Length = 173

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
 Frame = +1

Query: 268 ENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGED-NRHGHITSLAVKRSHR 444
           E Y  ++Y ++ +++P+   VAE   G I+ YV+ K+E  G D N HGH+T+L+V  + R
Sbjct: 25  ETYGFQFYLHYMMNYPEYYQVAEHPNGEIMAYVMGKIE--GRDTNWHGHVTALSVAPNFR 82

Query: 445 RLGLAQKLM 471
           RLGLA  +M
Sbjct: 83  RLGLAAYMM 91


>AF016450-12|AAB65989.1|  278|Caenorhabditis elegans Hypothetical
           protein B0238.10 protein.
          Length = 278

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = +1

Query: 262 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHI-VGYVLAKMEEDGEDNRHGHITSLAVKRS 438
           L E Y +  Y Y   +WP+  ++A D+  +  +G VL K+E D      G++  LAV  S
Sbjct: 117 LSEPYSIYTYRYFLHNWPEYCFLAYDQTNNTYIGAVLCKLELDMYGRCKGYLAMLAVDES 176

Query: 439 HRRLGLAQKLMNQASLAM 492
            RRLG+  +L+ +A  AM
Sbjct: 177 CRRLGIGTRLVRRALDAM 194


>U00067-6|AAL08037.1|  167|Caenorhabditis elegans Hypothetical
           protein F54E7.9 protein.
          Length = 167

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 492 G*MLSGKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYY--ADGEDAYSMMR 644
           G +L   +  LHV+ SN+ A+  Y N  GF +  + P+YY      DA+ M +
Sbjct: 113 GKLLKLPHAMLHVQTSNKTAIEFYKNR-GFNVDCLVPQYYQRCSPPDAFIMRK 164


>Z71259-4|CAA95788.2|  501|Caenorhabditis elegans Hypothetical
           protein F13G3.3 protein.
          Length = 501

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = +3

Query: 516 VSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADGEDAYSMMRDLSAFAVDNKTDSXATD 695
           VSLHV K   A ++LY  S+   +LEI   Y  +G   Y+ ++  +   + N+ +     
Sbjct: 171 VSLHVYKIFGAHMHLYIRSIVSPMLEILRVYEQEG---YATLKPWNRINLLNRDEQDFNP 227

Query: 696 NLEIKSGSAIISRVD 740
           NL ++  S   ++ D
Sbjct: 228 NLNVEFRSQAAAQTD 242


>Z81073-6|CAN86904.2|  215|Caenorhabditis elegans Hypothetical
           protein F30F8.10b protein.
          Length = 215

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 397 NRH-GHITSLAVKRSHRRLGLAQKLMN 474
           N H  +I S+AV +  RRLGLA +L+N
Sbjct: 94  NAHVAYILSIAVDKKFRRLGLATRLLN 120



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 516 VSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADGE 623
           V LHV  +N AAL+ Y    GF+     P+YY  GE
Sbjct: 136 VFLHVLSTNSAALSFY-KMHGFEFHASLPEYYRIGE 170


>Z81073-5|CAE17804.3|  242|Caenorhabditis elegans Hypothetical
           protein F30F8.10a protein.
          Length = 242

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 397 NRH-GHITSLAVKRSHRRLGLAQKLMN 474
           N H  +I S+AV +  RRLGLA +L+N
Sbjct: 121 NAHVAYILSIAVDKKFRRLGLATRLLN 147



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 516 VSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADGE 623
           V LHV  +N AAL+ Y    GF+     P+YY  GE
Sbjct: 163 VFLHVLSTNSAALSFY-KMHGFEFHASLPEYYRIGE 197


>U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of xx
           and xo animalsprotein 1, isoform a protein.
          Length = 656

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 346 GH--IVGYVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLM 471
           GH  IV Y+L K  +    NRHGH T L +     ++G+ ++L+
Sbjct: 134 GHLDIVKYLLEKGADPHIPNRHGH-TCLMIASYRNKVGIVEELL 176


>J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein (
           C.elegans fem-1 gene,complete cds. ).
          Length = 656

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 346 GH--IVGYVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLM 471
           GH  IV Y+L K  +    NRHGH T L +     ++G+ ++L+
Sbjct: 134 GHLDIVKYLLEKGADPHIPNRHGH-TCLMIASYRNKVGIVEELL 176


>AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical
           protein F52C6.11 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 675 FYYQLQKHSDLASWNMHLLHQHSTLAQFLKF*NPKS 568
           FY   ++H ++  W + L+HQ   +A FL++ +PK+
Sbjct: 26  FYGPEEEHFNV-QWRIVLIHQKEDVAVFLRYLHPKN 60


>Z81081-4|CAB03092.2|  491|Caenorhabditis elegans Hypothetical
           protein Y16B4A.1 protein.
          Length = 491

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 265 PENYQMKYYFYHGLS-WPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHG 408
           P N +   +F+  ++ + + S   E E+    G+V  + E DG+D R+G
Sbjct: 62  PNNLRKSNFFHFVIALYDRNSQPIEVERTQFAGFVEKEKEVDGQDTRNG 110


>AL023825-1|CAA19442.2|  491|Caenorhabditis elegans Hypothetical
           protein Y16B4A.1 protein.
          Length = 491

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 265 PENYQMKYYFYHGLS-WPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHG 408
           P N +   +F+  ++ + + S   E E+    G+V  + E DG+D R+G
Sbjct: 62  PNNLRKSNFFHFVIALYDRNSQPIEVERTQFAGFVEKEKEVDGQDTRNG 110


>AF052060-1|AAC06226.1|  491|Caenorhabditis elegans Olf-1/EBF
           transcription factor protein.
          Length = 491

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 265 PENYQMKYYFYHGLS-WPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHG 408
           P N +   +F+  ++ + + S   E E+    G+V  + E DG+D R+G
Sbjct: 62  PNNLRKSNFFHFVIALYDRNSQPIEVERTQFAGFVEKEKEVDGQDTRNG 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,883,601
Number of Sequences: 27780
Number of extensions: 334678
Number of successful extensions: 825
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)