Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30048
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   4.3  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    24   4.3  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    24   5.6  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    24   5.6  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    23   7.5  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    23   9.9  
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ...    23   9.9  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 247  LYYSWRESVNFSTMLKFTRLYADHNMNFLFLYRYLFRKE 131
            LY +  ++   ++ +K   + ++ +MN+L L R+LF  E
Sbjct: 1171 LYNALSKNYEMNSDIKDCIVESNESMNYLLLKRFLFTHE 1209


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 300 FFFFFPLNKSYGTIQARHFTIL 235
           FF+FF  +KS GT +   F I+
Sbjct: 43  FFYFFSSHKSKGTNEKPKFVIM 64


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 244 YYSWRESVNFSTMLKFTRL 188
           YY WR  ++F T     RL
Sbjct: 263 YYVWRRRIHFETSFNIIRL 281


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 8/40 (20%), Positives = 21/40 (52%)
 Frame = -3

Query: 268 WNNSSASLYYSWRESVNFSTMLKFTRLYADHNMNFLFLYR 149
           W+    ++   W++  N+ST+L    +  + N   +++Y+
Sbjct: 347 WDKLKPTIILLWKDFPNYSTLLS---IMQERNSKAMYMYK 383


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 37  KDV*CFCSGLHHDRDCGTSRF 99
           K+V C+C+ L  DRD  T  F
Sbjct: 873 KNVECYCTNLSIDRDDHTFSF 893


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 162 CFYIGTYFVKK*ILYNKTSVCK 97
           C+ IG Y ++K +   KT +C+
Sbjct: 650 CYDIGMYDLQKILKLKKTPICR 671


>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 264 FHNFYLREKKKK 299
           F+ F LREKKKK
Sbjct: 215 FYRFQLREKKKK 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,148,053
Number of Sequences: 5004
Number of extensions: 19999
Number of successful extensions: 44
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)