Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30048
         (303 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   1.4  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   1.4  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   1.4  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   1.4  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   1.4  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   1.4  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   1.4  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   1.4  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   1.4  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   1.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   2.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   2.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   7.7  

>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 265 NNSSASLYYSWRESVNFSTMLKFTRLYADHNMNFL 161
           NN+S S  Y++  + N      + +LY  +N+N++
Sbjct: 84  NNNSLSNNYNYNNNYNNYNKHNYNKLY--YNINYI 116


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 265 NNSSASLYYSWRESVNFSTMLKFTRLYADHNMNFL 161
           NN+S S  Y++  + N      + +LY  +N+N++
Sbjct: 84  NNNSLSNNYNYNNNYNNYNKHNYNKLY--YNINYI 116


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 265 NNSSASLYYSWRESVNFSTMLKFTRLYADHNMNFL 161
           NN+S S  Y++  + N      + +LY  +N+N++
Sbjct: 84  NNNSLSNNYNYNNNYNNYNKHNYNKLY--YNINYI 116


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 265 NNSSASLYYSWRESVNFSTMLKFTRLYADHNMNFL 161
           NN+S S  Y++  + N      + +LY  +N+N++
Sbjct: 84  NNNSLSNNYNYNNNYNNYNKHNYNKLY--YNINYI 116


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 265 NNSSASLYYSWRESVNFSTMLKFTRLYADHNMNFL 161
           NN+S S  Y++  + N      + +LY  +N+N++
Sbjct: 84  NNNSLSNNYNYNNNYNNYNKHNYNKLY--YNINYI 116


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 265 NNSSASLYYSWRESVNFSTMLKFTRLYADHNMNFL 161
           NN+S S  Y++  + N      + +LY  +N+N++
Sbjct: 84  NNNSLSNNYNYNNNYNNYNKHNYNKLY--YNINYI 116


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 265 NNSSASLYYSWRESVNFSTMLKFTRLYADHNMNFL 161
           NN+S S  Y++  + N      + +LY  +N+N++
Sbjct: 84  NNNSLSNNYNYNNNYNNYNKHNYNKLY--YNINYI 116


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 265 NNSSASLYYSWRESVNFSTMLKFTRLYADHNMNFL 161
           NN+S S  Y++  + N      + +LY  +N+N++
Sbjct: 84  NNNSLSNNYNYNNNYNNYNKHNYNKLY--YNINYI 116


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 265 NNSSASLYYSWRESVNFSTMLKFTRLYADHNMNFL 161
           NN+S S  Y++  + N      + +LY  +N+N++
Sbjct: 317 NNNSLSNNYNYNNNYNNYNKHNYNKLY--YNINYI 349


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 265 NNSSASLYYSWRESVNFSTMLKFTRLYADHNMNFL 161
           NN+S S  Y++  + N      + +LY  +N+N++
Sbjct: 317 NNNSLSNNYNYNNNYNNYNKHNYNKLY--YNINYI 349


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +2

Query: 14  TFVFIAWERMSNAFVVDYITIVIVG 88
           TF +  WE + N ++   +   +VG
Sbjct: 428 TFQYTDWEEVYNGYIYQKMVADVVG 452


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +2

Query: 14  TFVFIAWERMSNAFVVDYITIVIVG 88
           TF +  WE + N ++   +   +VG
Sbjct: 428 TFQYTDWEEVYNGYIYQKMVADVVG 452


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 131 NKYYIIKLQFVNRD 90
           NK  I KLQF N+D
Sbjct: 253 NKGSISKLQFHNKD 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,433
Number of Sequences: 438
Number of extensions: 1737
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)