Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30046
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 141 6e-34
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 139 2e-33
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 138 4e-33
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.2
11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931 29 2.8
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 29 2.8
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 3.7
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 6.4
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 28 6.4
08_02_0567 + 18769742-18769790,18769928-18771351 28 8.5
02_01_0254 - 1669461-1669590,1669833-1672318 28 8.5
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 141 bits (341), Expect = 6e-34
Identities = 65/92 (70%), Positives = 75/92 (81%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQR 526
VR + EALRRAKFKFPGRQ+ + R
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPGRQKIIHSR 169
Score = 134 bits (325), Expect = 5e-32
Identities = 59/79 (74%), Positives = 66/79 (83%)
Frame = +3
Query: 24 GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 203
GRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +S
Sbjct: 2 GRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVS 61
Query: 204 SEALEAGRICCNKYLVKTA 260
SEALEA RI CNKY+ K A
Sbjct: 62 SEALEAARIACNKYMTKNA 80
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +1
Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 636
P KI S+KWGFTK+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 160 PGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 139 bits (336), Expect = 2e-33
Identities = 64/87 (73%), Positives = 71/87 (81%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQR 511
VR EALRRAKFKFPGRQ+
Sbjct: 134 VRCKPNNAVHASEALRRAKFKFPGRQK 160
Score = 117 bits (281), Expect = 1e-26
Identities = 51/73 (69%), Positives = 60/73 (82%)
Frame = +3
Query: 42 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 221
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 222 GRICCNKYLVKTA 260
RI CNKY+ K+A
Sbjct: 64 ARIACNKYMTKSA 76
Score = 48.0 bits (109), Expect = 7e-06
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +1
Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDG 600
P KI S+KWGFTK+ RDE+ +L+ EGR+ DG
Sbjct: 156 PGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 138 bits (334), Expect = 4e-33
Identities = 65/87 (74%), Positives = 71/87 (81%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
K GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQR 511
VR D A EALRRAKFKFPGRQR
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPGRQR 471
Score = 131 bits (316), Expect = 6e-31
Identities = 57/76 (75%), Positives = 64/76 (84%)
Frame = +3
Query: 33 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 212
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 213 LEAGRICCNKYLVKTA 260
LEA RI CNKY+ K A
Sbjct: 372 LEAARIACNKYMAKHA 387
Score = 48.8 bits (111), Expect = 4e-06
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 630
P ++ S KWGFT+++RDE+ KL+ EGR+ DG + HG
Sbjct: 467 PGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 423 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 331
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931
Length = 478
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 411 LDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKDLRIKEV 530
L P P L GRH +R+ +S S + DLR++E+
Sbjct: 207 LAMPESPRWLAMRGRHADARVVLARTSDSAEEADLRLEEI 246
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -1
Query: 316 DADNVERVKSHADMELILSAVFTRYLLQQIR-----PASKASELSCSYSSDTKCTHSGKS 152
+ DN+ V AD L+++A +++Q + PA+ A+ C+ S TK H G+
Sbjct: 143 NCDNLPVVPLGADQPLVMAACKRAAVIKQQQQASSSPATAAAAAQCAVPSSTKAIHVGEE 202
Query: 151 STVA 140
+ ++
Sbjct: 203 AHIS 206
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 144 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVK 254
T D P C +HL SD Y S E ++AG+ C L K
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQK 624
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 377 GKPQGTVARVRIGQPIMSVRSSD 445
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = -2
Query: 681 RLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKL 556
+++ +D + +LPP ++ + +V+HN + + + + LLK+
Sbjct: 685 QIFFDDRNTSLPPDTRKAAYLSVMHNVSSTNRSG-YDALLKI 725
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 362 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQR 511
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR R
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHR 75
>02_01_0254 - 1669461-1669590,1669833-1672318
Length = 871
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 690 VLIRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLK 559
V +RL++ S PPS + F A + AA +AAL LL+
Sbjct: 24 VALRLFLHLTSAASPPSPHSTSFLARILAAAAAHDAALLPSLLR 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,031,905
Number of Sequences: 37544
Number of extensions: 517261
Number of successful extensions: 1461
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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