Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30046
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   136   1e-32
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   136   2e-32
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   135   2e-32
At5g47870.1 68418.m05914 expressed protein                             29   2.3  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   5.4  
At4g24120.1 68417.m03462 transporter, putative similar to iron-p...    28   5.4  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  136 bits (330), Expect = 1e-32
 Identities = 64/92 (69%), Positives = 71/92 (77%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
           K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ ++S
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQR 526
           VR  D       EALRRAKFKFPGRQ+    R
Sbjct: 138 VRCKDNHGVHAQEALRRAKFKFPGRQKIIVSR 169



 Score =  136 bits (328), Expect = 2e-32
 Identities = 60/79 (75%), Positives = 67/79 (84%)
 Frame = +3

Query: 24  GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 203
           GRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +S
Sbjct: 2   GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVS 61

Query: 204 SEALEAGRICCNKYLVKTA 260
           SEALEA RI CNKY+VK+A
Sbjct: 62  SEALEAARIACNKYMVKSA 80



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 23/47 (48%), Positives = 29/47 (61%)
 Frame = +1

Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 636
           P   KI VS+KWGFTK+ R E+ KLR   R+  DG   ++   HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPL 206


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  136 bits (328), Expect = 2e-32
 Identities = 60/79 (75%), Positives = 67/79 (84%)
 Frame = +3

Query: 24  GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 203
           GRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +S
Sbjct: 2   GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVS 61

Query: 204 SEALEAGRICCNKYLVKTA 260
           SEALEA RI CNKY+VK+A
Sbjct: 62  SEALEAARIACNKYMVKSA 80



 Score =  135 bits (327), Expect = 2e-32
 Identities = 64/92 (69%), Positives = 71/92 (77%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
           K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ ++S
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQR 526
           VR  D       EALRRAKFKFPGRQ+    R
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSR 169



 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 24/47 (51%), Positives = 31/47 (65%)
 Frame = +1

Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 636
           P   KI VS+KWGFTK+ R +F KLR+E R+  DG   ++   HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPL 206


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  135 bits (327), Expect = 2e-32
 Identities = 60/79 (75%), Positives = 67/79 (84%)
 Frame = +3

Query: 24  GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLS 203
           GRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +S
Sbjct: 2   GRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVS 61

Query: 204 SEALEAGRICCNKYLVKTA 260
           SEALEA RI CNKY+VK+A
Sbjct: 62  SEALEAARIACNKYMVKSA 80



 Score =  135 bits (327), Expect = 2e-32
 Identities = 64/92 (69%), Positives = 71/92 (77%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 430
           K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV IGQ ++S
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 431 VRSSDRWKAQVIEALRRAKFKFPGRQRSTYQR 526
           VR  D       EALRRAKFKFPGRQ+    R
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSR 169



 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 23/47 (48%), Positives = 31/47 (65%)
 Frame = +1

Query: 496 PRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 636
           P   KI VS+KWGFTK+ R ++ KLR+E R+  DG   ++   HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPL 206


>At5g47870.1 68418.m05914 expressed protein
          Length = 199

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 27/122 (22%), Positives = 43/122 (35%)
 Frame = +2

Query: 281 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 460
           R++L PF  + +N+ + C+G      G+ G     +  V       PI    SS      
Sbjct: 23  RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77

Query: 461 VIEALRRAKFKFPGRQRSTYQRSGVSQSMNVMSLRSCVKRAASLMTAALCSTARNMDLST 640
           +IE LR    K P     ++     S + +         R  S      C   R++  S 
Sbjct: 78  LIEILRDLNKKIPDNIVKSHDPPSTSAATSGFIPWYHANRMLSFYAPGWCGEVRDVIFSE 137

Query: 641 LG 646
            G
Sbjct: 138 NG 139


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 180  SDEYEQLSSEALEAGRICCNKYLV 251
            SDEY +  SEA   GR   N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454


>At4g24120.1 68417.m03462 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 665

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 246 LVKTAERISSISA*DF-TLSTLSASIKCYHALELIGSRLGCVVRLASLRVL*HVFALDSP 422
           L+K+   +S I   DF T      S K   A ++IG+ +GC+V   S  +    F + +P
Sbjct: 468 LIKSVVSVSCILMQDFKTAHYTMTSPKAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNP 527

Query: 423 S 425
           +
Sbjct: 528 N 528


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,893,210
Number of Sequences: 28952
Number of extensions: 380666
Number of successful extensions: 1096
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)