Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30045
         (396 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)             114   3e-26
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.2  
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  114 bits (274), Expect = 3e-26
 Identities = 53/76 (69%), Positives = 64/76 (84%)
 Frame = +1

Query: 37  MKFNKQVTSSRRKNRKRHFSAPSHIXRVXMSSPLSKELRXKFNVKSMPIRKDDEVQVVRG 216
           MK N +V+SSRRK+RK HFSAPS + R  MS+PLSKELR K+NV+S+P+RKDDEVQV RG
Sbjct: 1   MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRG 60

Query: 217 HYKGQQVGKVMQVIVK 264
           H+K QQVGKV+QV  K
Sbjct: 61  HFKSQQVGKVIQVYRK 76



 Score = 70.5 bits (165), Expect = 5e-13
 Identities = 33/47 (70%), Positives = 39/47 (82%)
 Frame = +3

Query: 255 YRKKFVVYIERIXRXXANGATAYVGIHPSKCVIVKLKMNKDRKAILD 395
           YRKK+V++I+RI R  ANGAT  VGIHPSK  IVKLK++KDRK ILD
Sbjct: 74  YRKKWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILD 120


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 37  MKFNKQVTSSRRKNRKRHFSAPSHIXRVXMSSPLSKELRXKFNVKSMP--IRK 189
           MK + Q+    RK+ K H   P HI +    S + K +R   N  + P  IRK
Sbjct: 1   MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 12   CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTY 110
            C F EER    QQ G   K E+ ++AF  +  Y
Sbjct: 2583 CPFTEERMESFQQIGRTAKSEESDKAFGFNTIY 2615


>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1429

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 9    PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYXASVDVLSP 137
            PCRFGE   N++     F +    + A  CSF       + SP
Sbjct: 1239 PCRFGEAPDNKIASPCRFGEAPDNKIASPCSFGEAPDNKIASP 1281



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 9    PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYXASVDVLSP 137
            PCRFGE   N++     F +    + A  C F       + SP
Sbjct: 1253 PCRFGEAPDNKIASPCSFGEAPDNKIASPCRFGEAPDNKIASP 1295



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 9    PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYXASVDVLSP 137
            PCRFGE   N++     F +    + A  C F       + SP
Sbjct: 1281 PCRFGEAPDNKIASPCSFGEAPDNKIASPCRFGEAPDNKIASP 1323


>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = +1

Query: 10  RVVLGKSDRMKFNKQVTSSRRKNRKRHFSAPSHIXRVXMSSPLSKELRXKFNVKSMPIRK 189
           R ++GK  R+K   Q      K +    S  + + ++   + + K LR     K+MP R+
Sbjct: 109 RGIVGKLLRVKKIYQ-KDEHLKLKMEVDSDNNEVKQLGNGNNMEKILREFIKKKNMPKRE 167

Query: 190 DDEVQ--VVRGHYKGQQVGK 243
           D+++Q  V    YK ++VG+
Sbjct: 168 DEKLQGNVSGRDYKNKKVGQ 187


>SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 28  SDRMKFNKQVTSSRRKNRKRHFSAPSH 108
           SDR K  + +TS ++K R+R  SA  H
Sbjct: 429 SDRAKEKETLTSPKQKRRRRMTSAHQH 455


>SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 24  EERQNEVQQAGDFLKKEKQEE 86
           EE +NE ++  D  KK+KQEE
Sbjct: 626 EELRNERKRMADLAKKQKQEE 646


>SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 21  GEERQNEVQQAGDFLKK--EKQEEAFQCSFTYXASVDVLSPV*GTKTXIQ 164
           G E++    +A ++ KK  E  +  F C   Y  +V  +    GTKT IQ
Sbjct: 163 GNEKKKFTYEALEYAKKSVELDDRDFACHKWYAITVSNVGDFEGTKTKIQ 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,554,285
Number of Sequences: 59808
Number of extensions: 217000
Number of successful extensions: 539
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)