BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30045
(396 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ439060-16|CAD27767.1| 278|Anopheles gambiae hypothetical prot... 25 0.76
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein. 23 3.1
AY578805-1|AAT07310.1| 753|Anopheles gambiae medea protein. 22 7.1
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein. 22 7.1
AY187040-1|AAO39754.1| 211|Anopheles gambiae putative antennal ... 22 9.4
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. 22 9.4
AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s... 22 9.4
AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containi... 22 9.4
>AJ439060-16|CAD27767.1| 278|Anopheles gambiae hypothetical protein
protein.
Length = 278
Score = 25.4 bits (53), Expect = 0.76
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 138 QGRGHXHSXYM*RSTEMPLPVFPS*G 61
Q GH HS +S +P+PVF G
Sbjct: 150 QAAGHLHSSVSEKSKTVPVPVFQKVG 175
>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
Length = 1356
Score = 23.4 bits (48), Expect = 3.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 311 CNSICRHSPFKVCDCQVE 364
C ++C F CDC++E
Sbjct: 740 CFALCHCCDFYACDCKME 757
>AY578805-1|AAT07310.1| 753|Anopheles gambiae medea protein.
Length = 753
Score = 22.2 bits (45), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 327 GIHPSKCVIVK 359
G HPSKCV ++
Sbjct: 64 GAHPSKCVTIQ 74
>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
Length = 1459
Score = 22.2 bits (45), Expect = 7.1
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = +2
Query: 311 CNSICRHSPFKVCDCQV 361
C ++C F CDC++
Sbjct: 776 CFALCHCCEFDACDCEM 792
>AY187040-1|AAO39754.1| 211|Anopheles gambiae putative antennal
carrier protein A5 protein.
Length = 211
Score = 21.8 bits (44), Expect = 9.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 13 VVLGKSDRMKFNKQVTSSRRKNR 81
+V + R+ FN+ V SSR NR
Sbjct: 147 LVYKQPSRIVFNETVLSSRNPNR 169
>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
Length = 1187
Score = 21.8 bits (44), Expect = 9.4
Identities = 7/23 (30%), Positives = 18/23 (78%)
Frame = +1
Query: 139 SKELRXKFNVKSMPIRKDDEVQV 207
SKEL+ K++ + ++++DE+++
Sbjct: 884 SKELKAKYHQRDKLLKQNDELKL 906
>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
symporter protein.
Length = 1127
Score = 21.8 bits (44), Expect = 9.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 316 VAPLAXSL*ILSMYTTNFLR*PASLCQPVG 227
+APL + + + NF ASL +PVG
Sbjct: 572 IAPLISNFFLAAYCLVNFSTFHASLAKPVG 601
>AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containing
protein I protein.
Length = 1340
Score = 21.8 bits (44), Expect = 9.4
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = -1
Query: 258 DNLHHFANLLAFVVSTYNLNFIVFA 184
+ +++ +N LAF+ + Y+L+ +A
Sbjct: 1009 NGMNYLSNQLAFINNPYDLSIATYA 1033
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 387,223
Number of Sequences: 2352
Number of extensions: 7269
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31212099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -