Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30045
         (396 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)           113   5e-26
At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ...   106   5e-24
At4g36240.1 68417.m05155 zinc finger (GATA type) family protein ...    28   2.6  
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    27   3.4  

>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
          Length = 146

 Score =  113 bits (271), Expect = 5e-26
 Identities = 55/73 (75%), Positives = 64/73 (87%)
 Frame = +1

Query: 37  MKFNKQVTSSRRKNRKRHFSAPSHIXRVXMSSPLSKELRXKFNVKSMPIRKDDEVQVVRG 216
           MKFN +V+SSRRKNRK HF+APS + RV MSSPLSK+LR K NV+SMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 217 HYKGQQVGKVMQV 255
            +KG++ GKVMQV
Sbjct: 61  TFKGRE-GKVMQV 72



 Score = 56.4 bits (130), Expect = 6e-09
 Identities = 23/47 (48%), Positives = 37/47 (78%)
 Frame = +3

Query: 255 YRKKFVVYIERIXRXXANGATAYVGIHPSKCVIVKLKMNKDRKAILD 395
           YR+K+V++IERI R   NG+T  VG++ S  +I KL+++KDRK++L+
Sbjct: 73  YRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLE 119


>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
           RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
          Length = 146

 Score =  106 bits (255), Expect = 5e-24
 Identities = 52/73 (71%), Positives = 62/73 (84%)
 Frame = +1

Query: 37  MKFNKQVTSSRRKNRKRHFSAPSHIXRVXMSSPLSKELRXKFNVKSMPIRKDDEVQVVRG 216
           MK+N +VTSSRRKNRK HF+A S   RV MSSPLS +LR K+NV+SMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 217 HYKGQQVGKVMQV 255
            YKG++ GKV+QV
Sbjct: 61  TYKGRE-GKVVQV 72



 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 27/47 (57%), Positives = 37/47 (78%)
 Frame = +3

Query: 255 YRKKFVVYIERIXRXXANGATAYVGIHPSKCVIVKLKMNKDRKAILD 395
           YR+K+V++IERI R   NG T  VGI PSK VI KL+++KDRK++L+
Sbjct: 73  YRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLE 119


>At4g36240.1 68417.m05155 zinc finger (GATA type) family protein
           NTL1 protein, curled-leaved tobacco, PIR2:S46419
          Length = 238

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +3

Query: 81  EEAFQCSFTYXASVDVLSPV*GTKTXIQC-KIHAYSQRR*SSGCTWTLQRPTGWQSDAGY 257
           E++F  S +Y +S   ++PV   +   QC  +   S+RR ++G  W+++ P+   S A  
Sbjct: 82  EDSF--SESYISSDFPVNPVASVEVRRQCVPVKPRSKRRRTNGRIWSMESPSPLLSTAVA 139

Query: 258 RKK 266
           R+K
Sbjct: 140 RRK 142


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor [Homo
            sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1706

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 62   PQEGKTGRGISVLLHI 109
            P +G TG GISVLLH+
Sbjct: 1408 PFQGSTGSGISVLLHL 1423


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,926,872
Number of Sequences: 28952
Number of extensions: 143284
Number of successful extensions: 284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)