Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30043
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-12|CAB01666.3|  448|Caenorhabditis elegans Hypothetical p...    29   5.3  
Z78411-5|CAB01647.3|  448|Caenorhabditis elegans Hypothetical pr...    29   5.3  

>Z78413-12|CAB01666.3|  448|Caenorhabditis elegans Hypothetical
           protein F02D8.4 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 671 YFLYVIVKQKIYIQILDYLQLVLIDVPKP 757
           Y +Y IV Q  Y  +LD +QLV++    P
Sbjct: 188 YLIYTIVSQPAYRNLLDSVQLVVVPNTNP 216


>Z78411-5|CAB01647.3|  448|Caenorhabditis elegans Hypothetical
           protein F02D8.4 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 671 YFLYVIVKQKIYIQILDYLQLVLIDVPKP 757
           Y +Y IV Q  Y  +LD +QLV++    P
Sbjct: 188 YLIYTIVSQPAYRNLLDSVQLVVVPNTNP 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,627,052
Number of Sequences: 27780
Number of extensions: 200206
Number of successful extensions: 390
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)