Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30041
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    40   9e-05
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    27   0.65 
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   1.5  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    24   4.6  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    24   6.1  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    23   8.1  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    23   8.1  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 39.9 bits (89), Expect = 9e-05
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +2

Query: 17  KGFTVVYK-KAKATRKPAKNLIRRPFKAGAR-RSLYK-VKRLLKANHYRTDLCKATLRRA 187
           +G  ++ K   K  +KPAK L R+   A A  R  YK +   +    YR DL K ++ RA
Sbjct: 62  RGVVLITKTNPKNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARA 120

Query: 188 SAILRSQRP 214
           SAIL SQRP
Sbjct: 121 SAILSSQRP 129


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 27.1 bits (57), Expect = 0.65
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 265 LQIIRLGCGCLSLFCFDGPLG 203
           ++ ++ GC C+ + C+DGP G
Sbjct: 475 IRSLQRGCKCIEIDCWDGPNG 495


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 186 LQPSSAPRGPSKQKRLRQP-QPSRIICKRLINF 281
           L PSS P  PS  + L QP  P+ +  K L  F
Sbjct: 415 LTPSSTPSTPSPAESLPQPSNPTSVYAKSLKEF 447


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 109 VTVQSEEVVKG*PLPHRPMQGYPSSCFSHPPLPEAHQS 222
           V +  +  VK  P P  P Q YP +  S  P  +  Q+
Sbjct: 194 VRLLEDSAVKAQPPPPPPQQNYPPAASSSAPPMQYQQT 231


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 86  PFKAGARRSLYKVKRLLKANHYRTDL 163
           P   GA   L  V  LLK  +Y TDL
Sbjct: 81  PIPKGAPNFLADVLNLLKKKYYATDL 106


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 144 LAFNNLFTLYSDLLAPAL 91
           +AFNN+F  +S  L P +
Sbjct: 92  IAFNNIFAFHSSQLRPTI 109


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 145 PLPHRPMQGYPSSCFSHPPLPEAHQSK 225
           P P+ P  GYP   + +P  P  + ++
Sbjct: 100 PQPYPPQGGYPQQPYYYPNQPNYYPAQ 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,093,715
Number of Sequences: 5004
Number of extensions: 18289
Number of successful extensions: 54
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)