Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30041
(311 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 34 0.020
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116 34 0.020
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869 34 0.020
03_05_1049 - 29956379-29956400,29957103-29957188,29957269-299574... 28 1.3
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 28 1.8
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842... 27 3.1
04_04_1002 - 30025914-30026021,30026116-30026297,30026626-300269... 27 4.1
05_05_0083 - 22259499-22259658,22259745-22260112,22260824-22261072 26 5.4
05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,491... 26 5.4
01_04_0020 + 15142402-15143421 26 7.2
01_02_0059 - 10701859-10701963,10702034-10702153,10702534-107026... 26 7.2
04_04_1003 - 30031099-30031194,30031274-30031352,30031566-300318... 25 9.5
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 34.3 bits (75), Expect = 0.020
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +2
Query: 41 KAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 205
K K PAK + + R+ VK + N+YR DL K L R S++ RS
Sbjct: 75 KTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129
>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
Length = 147
Score = 34.3 bits (75), Expect = 0.020
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +2
Query: 41 KAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 205
K K PAK + + R+ VK + N+YR DL K L R S++ RS
Sbjct: 75 KTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129
>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
Length = 145
Score = 34.3 bits (75), Expect = 0.020
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +2
Query: 41 KAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 205
K + KPA + + R+ VK + N+YR DL K L R SA+ RS
Sbjct: 75 KTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 129
>03_05_1049 -
29956379-29956400,29957103-29957188,29957269-29957413,
29958518-29958813,29959242-29959253
Length = 186
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 174 PFVVLQPSSAPRGPSKQKRLRQPQPSRIICKR 269
PFV + PSS P P + QP P +++C R
Sbjct: 72 PFVGVPPSSPPALPPIKCGAVQPVPRQVVCVR 103
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 165 ARLPFVVLQPSSAPRGPSKQKRLRQPQPSR 254
A PF + +S+PR P + RQP P R
Sbjct: 10 ASAPFPTIPAASSPRNPRAARPRRQPAPFR 39
>05_04_0210 +
19082778-19082940,19083806-19083875,19084172-19084295,
19084442-19084897
Length = 270
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 212 ASGSGGWLKHDEG*PCIGLCGSG*P 138
A GSGGW + +G CG+G P
Sbjct: 28 AEGSGGWRRRRDGHVARARCGAGEP 52
>04_04_1002 -
30025914-30026021,30026116-30026297,30026626-30026908,
30026992-30027630
Length = 403
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 74 LIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRR 184
L+ R + G LYK L A+++ T CKA L +
Sbjct: 51 LLGRQSQVGCLDELYKSVEDLSADYFHTKACKAMLMK 87
>05_05_0083 - 22259499-22259658,22259745-22260112,22260824-22261072
Length = 258
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 260 NYPTWLRLS*PFLL*WASGSGGWLKH 183
++P+W + L W +GSGG ++H
Sbjct: 12 SHPSWAAAARGLLATWGAGSGGRVRH 37
>05_01_0564 -
4919294-4919391,4919491-4919620,4919700-4919789,
4919882-4919987,4920087-4920187,4920347-4920442,
4920549-4920648,4920761-4920897,4920980-4921111,
4921222-4921320,4921397-4921594,4921715-4921892,
4922020-4922075,4922168-4922320,4922422-4922514,
4922605-4922706,4922817-4922878,4922995-4923090,
4923354-4923453,4923546-4923617,4923728-4923775,
4923853-4923996
Length = 796
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 19 GIHSSVQESKGYQKAR*KLNPPSIQGWCQEVTVQSEEVVKG 141
G++ E + ++K NP ++ W ++ +S+EV+KG
Sbjct: 703 GVNPLKVEIRLFEKLFLSENPVELEDWLGDLNPRSKEVIKG 743
>01_04_0020 + 15142402-15143421
Length = 339
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +2
Query: 59 KPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 208
+PA +RRP A A +LY R H + +A A++ Q
Sbjct: 155 RPASYQVRRPMSARAHGTLYFCYRFTDVKHPALEAIEAATATATSSATKQ 204
>01_02_0059 -
10701859-10701963,10702034-10702153,10702534-10702609,
10702897-10703276
Length = 226
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 156 QTYARLPFVVLQPSSAPRGPSKQKRL--RQPQPSRIICKRLI 275
Q ARLP PSS P + R+ +P PS+I C+RL+
Sbjct: 36 QAPARLP----PPSSRASSPVELPRIVPYRPAPSQIDCRRLV 73
>04_04_1003 -
30031099-30031194,30031274-30031352,30031566-30031819,
30032003-30032029,30032135-30032761
Length = 360
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 74 LIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRR 184
L+ + + G LYK L ++++T CKA L R
Sbjct: 51 LLGKQSQIGCLDELYKSVEALSEDYFQTKACKAMLLR 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,772,148
Number of Sequences: 37544
Number of extensions: 155415
Number of successful extensions: 426
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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