Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30041
(311 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022) 55 1e-08
SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0) 31 0.14
SB_46512| Best HMM Match : TIL (HMM E-Value=1.3) 27 2.3
SB_45094| Best HMM Match : DUF1090 (HMM E-Value=1.6) 27 2.3
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09) 27 2.3
SB_56125| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_41690| Best HMM Match : DSL (HMM E-Value=0) 26 5.4
SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 26 5.4
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35) 26 5.4
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_38679| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.6) 26 7.2
SB_37763| Best HMM Match : rve (HMM E-Value=4.2e-27) 26 7.2
SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18) 26 7.2
SB_28225| Best HMM Match : YL1 (HMM E-Value=2.1) 26 7.2
SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_39148| Best HMM Match : OEP (HMM E-Value=0.33) 25 9.5
>SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)
Length = 90
Score = 54.8 bits (126), Expect = 1e-08
Identities = 27/69 (39%), Positives = 39/69 (56%)
Frame = +2
Query: 8 PDRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRA 187
P KG + +K KA KP K + + +RR+L ++ + N+YR DL +RRA
Sbjct: 8 PSGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRRA 67
Query: 188 SAILRSQRP 214
AILRSQ+P
Sbjct: 68 CAILRSQKP 76
>SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0)
Length = 219
Score = 31.5 bits (68), Expect = 0.14
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 265 LQIIRLGCGCLSLFCFDGPLG 203
++ +R+GC CL L C+DGP G
Sbjct: 90 VRCLRMGCRCLELDCWDGPDG 110
>SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)
Length = 382
Score = 27.5 bits (58), Expect = 2.3
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 35 YKKAKATRKPAK---NLIRRPFK-AGARRSLYKVK-RLLKANHYRTDLCKATLRRASA 193
YK AKA KPAK L + +K A A+ L K K +L KA H L KA + A A
Sbjct: 278 YKLAKAKYKPAKAKYKLAKAKYKLAKAKYKLAKAKHKLAKAKH---KLAKAKYKLAKA 332
>SB_45094| Best HMM Match : DUF1090 (HMM E-Value=1.6)
Length = 169
Score = 27.5 bits (58), Expect = 2.3
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 35 YKKAKATRKPAK---NLIRRPFK-AGARRSLYKVK-RLLKANHYRTDLCKATLRRASA 193
YK AKA KPAK L + +K A A+ L K K +L KA H L KA + A A
Sbjct: 65 YKLAKAKYKPAKAKYKLAKAKYKLAKAKYKLAKAKHKLAKAKH---KLAKAKYKLAKA 119
>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
Length = 720
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 52 YQKAR*KLNPPSIQGWCQEVTV 117
YQK LNP S GWC+ V V
Sbjct: 451 YQKDPCVLNPCSSHGWCEAVNV 472
>SB_56125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +1
Query: 133 VKG*PLPHR----PMQGYPSSCFSHPPLPEAHQSKKG 231
V+G P P + P QGYP+ +PP + +Q+ G
Sbjct: 38 VQGYPPPQQGYPPPQQGYPAQQQGYPPAQQGYQTTGG 74
>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
Length = 2798
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 144 TTTAQTYARLPFVVLQPSSAP 206
TTT +Y+++P V+ PS++P
Sbjct: 2413 TTTYSSYSKIPSTVILPSASP 2433
>SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 943
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 138 RLTTTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQPSRIICKR 269
+ T A Y P P +AP P+ +K + QP+P + K+
Sbjct: 873 KTTLHANLYIPKP-TTTPPPTAPPEPATKKHVSQPKPKHVAKKK 915
>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
Length = 681
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 144 TTTAQTYARLPFVVLQPSSAP 206
TTT +Y+++P V+ PS++P
Sbjct: 404 TTTYSSYSKIPSTVILPSASP 424
>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 154 HRPMQGYPSSCFSHPPLPEAH 216
H P+ G P++ S PP+P H
Sbjct: 242 HPPISGPPTTSMSGPPIPVHH 262
>SB_38679| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.6)
Length = 147
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 174 PFVVLQPSSAPRGPSKQKRLRQPQPS 251
P VV +P +P+ P+K K +PS
Sbjct: 56 PLVVDEPKPSPKSPTKSKSQTDSRPS 81
>SB_37763| Best HMM Match : rve (HMM E-Value=4.2e-27)
Length = 510
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 13 QEGIHSSVQESKGYQKAR*KLNPPSIQGWCQEVTV---QSEEVVKG 141
Q+ +HSS + ++ K K NPPS ++V V Q++++VKG
Sbjct: 398 QKALHSSNESARRMVKRELKRNPPSRYFVGEKVLVRLPQTKKLVKG 443
>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
Length = 521
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 155 CGSG*PLTTSSLCTVTSWH 99
C S P+ T S C+V +WH
Sbjct: 206 CCSAFPIRTPSTCSVCTWH 224
>SB_28225| Best HMM Match : YL1 (HMM E-Value=2.1)
Length = 331
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 13 QEGIHSSVQESKGYQKAR*KLNPPSIQGWCQEVTV---QSEEVVKG 141
Q+ +HSS + ++ K K NPPS ++V V Q++++VKG
Sbjct: 58 QKALHSSNESARRMVKRELKRNPPSRYFVGEKVLVRLPQTKKLVKG 103
>SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1167
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 13 QEGIHSSVQESKGYQKAR*KLNPPSIQGWCQEVTV---QSEEVVKG 141
Q+ +HSS + ++ K K NPPS ++V V Q++++VKG
Sbjct: 661 QKALHSSNESARRMVKRELKRNPPSRYFVGEKVLVRLPQTKKLVKG 706
>SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 44 AKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 199
AK TRK + + +P KAG L++ K+ H D+ K ++AIL
Sbjct: 529 AKETRKCKRKALGKPLKAG----LFEDKKQGVGTHSMVDVLKDLQSLSAAIL 576
>SB_39148| Best HMM Match : OEP (HMM E-Value=0.33)
Length = 208
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +2
Query: 35 YKKAKATRKPAK---NLIRRPFK-AGARRSLYKVK-RLLKANH 148
YK AKA KPAK L + +K A A+ L K K +L KA +
Sbjct: 101 YKLAKAKYKPAKATYKLAKAKYKLANAKNKLAKAKYKLAKAKY 143
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,696,187
Number of Sequences: 59808
Number of extensions: 162106
Number of successful extensions: 463
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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