Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30041
         (311 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   1.5  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   2.6  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   2.6  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   2.6  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   2.6  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   2.6  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   8.0  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    20   8.0  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 80  RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 208
           +RP  A +   L ++KR    N Y T+  +  L R   +  +Q
Sbjct: 21  KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQ 63


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 49  LCFLVHYCESLPVRV 5
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 49  LCFLVHYCESLPVRV 5
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 49  LCFLVHYCESLPVRV 5
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 49  LCFLVHYCESLPVRV 5
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 49  LCFLVHYCESLPVRV 5
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 80  RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 208
           +RP  A +   L ++KR    N Y T+  +  L R   +  +Q
Sbjct: 21  KRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQ 63


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 189  QPSSAPRGPSKQKRLRQPQPSR 254
            Q    P+  S+Q + +QPQP +
Sbjct: 1512 QQQQQPQQQSQQPQQQQPQPQQ 1533


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 230 PFLL*WASGSGGWLKHD 180
           PFL+ W     GW++ +
Sbjct: 171 PFLIHWIWTPHGWMRRN 187


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 174 VALHRSVR*WLAFNNLFTLYSDLLAPALNG 85
           + LH ++   L  +NLF L+     P+L G
Sbjct: 22  IGLHNNMCTSLNLSNLFWLFVGTYFPSLIG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,525
Number of Sequences: 438
Number of extensions: 1307
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)