Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30038
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    37   0.002
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    29   0.63 
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   3.4  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   4.4  
SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces...    26   4.4  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   7.8  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +2

Query: 341 KFSIDGTTYQLANNIG-KDHLHGGINGFNKANWNSTV-----DGTKVIFSYLSKDGEEGY 502
           +F +DG  Y L  N   K  LHGG NGF+K  +   +     D   + F  + KDG  G+
Sbjct: 432 QFEVDGHLYTLCKNENNKTTLHGGNNGFDKQFFLGPIARQYEDYNTLEFILVDKDGNNGF 491

Query: 503 P 505
           P
Sbjct: 492 P 492



 Score = 32.3 bits (70), Expect = 0.068
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 249 SGFDELDGYVNRNTPYLGTTVGRCANRI 332
           +GF++   Y  +  P+ G T+GR ANRI
Sbjct: 401 NGFNDFSRYKLKENPFFGATIGRFANRI 428


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 346 EFCPPILLAQRPTVVPKYGVFLFTYPSS 263
           EF PP+   Q P  +P + ++L ++PS+
Sbjct: 463 EFVPPVRTNQIPRQIPSHSIWLSSFPSA 490


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -3

Query: 394  IFPNVVSELISRAVDAEFCPPILLAQRPTVVPKYGVFLFTYPSSSSNPEQRH 239
            + P +++ + + +         LL+    V P+  V+  T  S S+NP+Q+H
Sbjct: 1737 VIPQLIARIHTSSSSVRASVHQLLSDIGRVHPQALVYSLTVSSKSTNPQQKH 1788


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 537 NFISNVSNKIPGYPSSPSFDR*LNITLVPSTVEFQFALLNPLIPP 403
           N + N  +K PG     + D  L I+L+P T+E + AL N L+ P
Sbjct: 529 NAVINGPHKWPGASHIQNEDGTL-ISLMPLTIEQRTALANQLLTP 572


>SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 72

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 55  RLNHSF*IINMVTLNVE 105
           RLNHS  +INM  +NVE
Sbjct: 29  RLNHSLQLINMSNMNVE 45


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 127 ETVSKFTWRASDGFSVSVIXYGAT 198
           E +S+    A DG++VS+  YG T
Sbjct: 554 EEISQLIQSAIDGYNVSIFAYGQT 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,413
Number of Sequences: 5004
Number of extensions: 55970
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)