Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30038
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0315 - 3454846-3455465,3455562-3455663,3455828-3455954,345... 61 9e-10
02_04_0336 + 22121913-22122111,22122295-22122344,22122538-221226... 54 1e-07
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 52 4e-07
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447 48 5e-06
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791... 47 2e-05
04_04_0115 + 22868554-22868749,22868863-22868912,22870009-228701... 38 0.010
06_02_0231 - 13286918-13287388 30 1.5
08_01_0066 - 455589-455687,455902-455976,456531-456677,457158-45... 29 2.6
03_01_0566 - 4184379-4184491,4184616-4184726,4184800-4184889,418... 29 2.6
04_04_0187 - 23411085-23411477,23411626-23411631 29 4.6
08_01_0054 - 367770-370166 28 6.0
>10_01_0315 -
3454846-3455465,3455562-3455663,3455828-3455954,
3456698-3456727,3456828-3456877,3457004-3457106
Length = 343
Score = 60.9 bits (141), Expect = 9e-10
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Frame = +2
Query: 341 KFSIDGTTYQLANNIGKDHLHGGINGFNKANWN---STVDGTKVIFSYLSKDGEEGYPG 508
KF+++G Y LA N G + LHGG+ GF+K W+ + + F Y SKDGEEGYPG
Sbjct: 83 KFTLNGVEYSLAINNGPNSLHGGLKGFDKVVWDVVERKSECPSITFQYHSKDGEEGYPG 141
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 169 SVSVIXYGATIQSIQVPDKYGITSDVVLG 255
+ + +GATI S+ VPD +G +DVVLG
Sbjct: 15 TAKIAAWGATITSLIVPDAHGNLADVVLG 43
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 502 PGYLITNITYEVTDDNALYVDFXSXXXXXXXXXXXX-HSYFNLAGHDTG 645
PG + TY + D L +D + H+Y+NLAGH++G
Sbjct: 140 PGDVTVRATYSLPDSTTLRLDMEAVAENKATPINLAQHTYWNLAGHNSG 188
>02_04_0336 +
22121913-22122111,22122295-22122344,22122538-22122661,
22122810-22122917,22123610-22124265
Length = 378
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Frame = +2
Query: 341 KFSIDGTTYQLANNIGKDHLHGGINGFNKANWN-----STVDGTKVIFSYLSKDGEEGYP 505
+F++DG TY+L N G + LHGG GF+K W + D ++ Y S DGE+G+P
Sbjct: 104 RFTLDGKTYRLFRNDGNNSLHGGHRGFSKVIWTVKEHVAGGDSPRITLYYHSFDGEQGFP 163
Query: 506 G 508
G
Sbjct: 164 G 164
Score = 35.5 bits (78), Expect = 0.040
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 166 FSVSVIXYGATIQSIQVPDKYGITSDVVLG 255
FS+ V +GATI S+ +PD G +DVVLG
Sbjct: 46 FSIRVTNWGATIMSVILPDSKGNLADVVLG 75
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 252 GFDELDGYVNRNTPYLGTTVGRCANRI 332
G+D + YVN T Y G +GR ANRI
Sbjct: 75 GYDTVAEYVN-GTAYFGGLIGRVANRI 100
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +2
Query: 341 KFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTV----DGTKVIFSYLSKDGEEGYPG 508
KF+++ Y LA N + LHGG GF+K W + + F Y SKDGEEG+PG
Sbjct: 222 KFTLNDKQYSLAINNPPNTLHGGFKGFDKIIWEVAEYVKGENPSITFKYYSKDGEEGFPG 281
Score = 31.5 bits (68), Expect = 0.65
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 190 GATIQSIQVPDKYGITSDVVLG 255
GAT+ S+ VPD G+ DVVLG
Sbjct: 126 GATVTSLLVPDNNGVLGDVVLG 147
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 270 GYVNRNTPYLGTTVGRCANRI 332
G N +PY G VGR ANRI
Sbjct: 198 GVPNGTSPYFGCIVGRVANRI 218
>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
Length = 309
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +2
Query: 341 KFSIDGTTYQLANNIGKDHLHGGINGFNKANWN----STVDGTKVIFSYLSKDGEEGYPG 508
+F++ G + N GK+ LHGG GFN+ W+ +T + F Y S DGE+G+PG
Sbjct: 42 RFTVKGHAFHTYKNDGKNTLHGGHRGFNQVFWSVRERATGHFPYITFYYRSYDGEQGFPG 101
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 252 GFDELDGYVNRNTPYLGTTVGRCANRIGG 338
G+ ++ YVN +T Y G VGR ANRI G
Sbjct: 13 GYKDIGSYVN-DTTYFGALVGRVANRIAG 40
>04_04_0116 +
22877296-22877482,22877578-22877627,22879057-22879180,
22879266-22879373,22879462-22880084
Length = 363
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +2
Query: 323 QQDRRTKFSIDGTTYQLANNIGKDHLHGGINGFNKANWN-----STVDGTKVIFSYLSKD 487
Q+ R +F +DG Y N G++ +HGG GF+K W D + Y S D
Sbjct: 94 QRIARGRFVLDGKVYHTYINDGRNAIHGGHRGFSKVIWTVKEYVGGGDSPYITLYYRSFD 153
Query: 488 GEEGYPG 508
GE+G+PG
Sbjct: 154 GEQGFPG 160
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +1
Query: 127 ETVSKFTWRASDGFSVSVIXYGATIQSIQVPDKYGITSDVVLGL 258
+TV ++ R D FSV + +GAT+ S+ +PD G +DVVLGL
Sbjct: 30 KTVGEYVLRKGD-FSVKITNWGATMMSVVLPDSKGNLADVVLGL 72
>04_04_0115 +
22868554-22868749,22868863-22868912,22870009-22870195,
22870226-22870333,22872501-22873165
Length = 401
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +1
Query: 106 DFGQHHGETVSKFTWRASDGFSVSVIXYGATIQSIQVPDKYGITSDVVLG 255
D + TV + R D FS+ V +GA I S+ +PD G DVVLG
Sbjct: 26 DAAERKATTVGVYELRKGD-FSIRVTNWGAVIMSVVLPDSRGKLDDVVLG 74
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +3
Query: 252 GFDELDGYVNRNTPYLGTTVGRCANRI 332
G+D + YVN +T Y G VGR ANRI
Sbjct: 74 GYDTIAEYVNSST-YFGALVGRVANRI 99
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 335 RTKFSIDGTTYQLANNIGKDHLHGGINGF 421
+ +F +DG Y L N GK+ LHG + F
Sbjct: 101 KARFVLDGKAYHLYPNDGKNTLHGILEKF 129
>06_02_0231 - 13286918-13287388
Length = 156
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = -2
Query: 374 RVDKSCRRC*ILSADPVGTAADRGP*VRCVSVHVPVEFVKPRTTSLVIPYL 222
RV RC +L P T+A R RC S+ P V P + LV P L
Sbjct: 37 RVAGHAARCLLLRLRPPLTSAGRNGQPRCSSLQYPNGLVPPSHSDLVAPVL 87
>08_01_0066 -
455589-455687,455902-455976,456531-456677,457158-457292,
457380-457508,457719-457814,458212-458403
Length = 290
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -3
Query: 364 SRAVDAEFCPPILLAQRPTVVPKYGVFLFTYPSSS 260
S A A PP+L A+RPTV + G+FL P++S
Sbjct: 4 SMAATATLSPPVLSAERPTV--RGGLFLPPSPATS 36
>03_01_0566 -
4184379-4184491,4184616-4184726,4184800-4184889,
4184996-4185113
Length = 143
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 76 IINMVTLNVEDFGQHHGETVSKFTWR 153
I ++VTL D QHHG++ KFT R
Sbjct: 82 IRSLVTLAFADLLQHHGQSARKFTTR 107
>04_04_0187 - 23411085-23411477,23411626-23411631
Length = 132
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +3
Query: 540 RRQCLVCRLXVDDNXEDRCKSDEPFVF*FGWPRYWCPRDLQPYL--CYKR 683
++ C L V++ E+ K EP WP YWCP P CY R
Sbjct: 62 KKVCYAEILLVEEEKEEEEKK-EPECKPCYWPPYWCPPPEDPTCKPCYPR 110
>08_01_0054 - 367770-370166
Length = 798
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 342 NSASTARLINSLTTLGKIIYMAGLMDLIRRIGIPP 446
NSA+ L++ T G ++ M L+D++ R GI P
Sbjct: 342 NSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQP 376
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,869,659
Number of Sequences: 37544
Number of extensions: 366160
Number of successful extensions: 887
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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