Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30038
(687 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 29 0.041
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 29 0.041
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 25 0.68
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 24 1.2
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 24 1.2
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 24 1.2
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 24 1.2
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 24 1.2
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 24 1.2
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 23 2.1
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 22 6.3
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 22 6.3
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 8.3
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 29.1 bits (62), Expect = 0.041
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 401 HGGINGFNKANWNSTVDGTKVIFSYLSKDGEEG 499
HG I GFN ++ FS +S DGEEG
Sbjct: 1036 HGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1068
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 29.1 bits (62), Expect = 0.041
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 401 HGGINGFNKANWNSTVDGTKVIFSYLSKDGEEG 499
HG I GFN ++ FS +S DGEEG
Sbjct: 1032 HGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1064
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 25.0 bits (52), Expect = 0.68
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +2
Query: 260 RTRRVREQKHTVLRDHGRPLCQQDRRTKFSIDGTTYQLANNIGKDHL 400
R +R + R+ G C +DR ++ Y +N+ + HL
Sbjct: 233 RYEDLRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHL 279
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 24.2 bits (50), Expect = 1.2
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 192 GYDTVNSG-TGQIRNHQ*RCSGFDELDGYVN 281
G +V+SG +RN++ S DEL G++N
Sbjct: 36 GQRSVSSGFRSSLRNYKTLISSHDELPGHIN 66
Score = 21.8 bits (44), Expect = 6.3
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Frame = +2
Query: 329 DRRTKFSIDGTTYQLANNIGKDHLHGGINGFN------KANWNSTVDGTKVIFSYLSKDG 490
D + D + L+N + +L+G I+ KAN V T +Y+ D
Sbjct: 486 DIKVDHEYDQNVWVLSNKLAM-YLYGSIDSSKINYRIFKANVKEAVKDTXCDPNYVVPDS 544
Query: 491 EEGYPGI 511
E GY I
Sbjct: 545 EHGYDEI 551
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 24.2 bits (50), Expect = 1.2
Identities = 10/42 (23%), Positives = 18/42 (42%)
Frame = +2
Query: 275 REQKHTVLRDHGRPLCQQDRRTKFSIDGTTYQLANNIGKDHL 400
R + R+ G C +DR ++ Y +N+ + HL
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHL 279
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 24.2 bits (50), Expect = 1.2
Identities = 10/42 (23%), Positives = 18/42 (42%)
Frame = +2
Query: 275 REQKHTVLRDHGRPLCQQDRRTKFSIDGTTYQLANNIGKDHL 400
R + R+ G C +DR ++ Y +N+ + HL
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHL 279
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 24.2 bits (50), Expect = 1.2
Identities = 10/42 (23%), Positives = 18/42 (42%)
Frame = +2
Query: 275 REQKHTVLRDHGRPLCQQDRRTKFSIDGTTYQLANNIGKDHL 400
R + R+ G C +DR ++ Y +N+ + HL
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHL 279
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 24.2 bits (50), Expect = 1.2
Identities = 10/42 (23%), Positives = 18/42 (42%)
Frame = +2
Query: 275 REQKHTVLRDHGRPLCQQDRRTKFSIDGTTYQLANNIGKDHL 400
R + R+ G C +DR ++ Y +N+ + HL
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHL 279
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 24.2 bits (50), Expect = 1.2
Identities = 10/42 (23%), Positives = 18/42 (42%)
Frame = +2
Query: 275 REQKHTVLRDHGRPLCQQDRRTKFSIDGTTYQLANNIGKDHL 400
R + R+ G C +DR ++ Y +N+ + HL
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHL 279
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.4 bits (48), Expect = 2.1
Identities = 10/42 (23%), Positives = 18/42 (42%)
Frame = +2
Query: 275 REQKHTVLRDHGRPLCQQDRRTKFSIDGTTYQLANNIGKDHL 400
R + R+ G C +DR ++ Y +N+ + HL
Sbjct: 238 RHEDGNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHL 279
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 6.3
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 370 TR*QHWERSFTW 405
T+ QHW R TW
Sbjct: 18 TQAQHWSRGNTW 29
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 6.3
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 370 TR*QHWERSFTW 405
T+ QHW R TW
Sbjct: 18 TQAQHWSRGNTW 29
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.4 bits (43), Expect = 8.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 295 YGVFLFTYPSSSSNPEQR 242
Y FL+ SS NP+Q+
Sbjct: 959 YSSFLYKSSESSCNPDQK 976
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,080
Number of Sequences: 438
Number of extensions: 4042
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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