Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30038
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17940.1 68416.m02284 aldose 1-epimerase family protein simil...    53   2e-07
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil...    51   8e-07
At3g47800.1 68416.m05207 aldose 1-epimerase family protein simil...    51   8e-07
At3g03880.1 68416.m00401 expressed protein                             31   0.95 
At4g11480.1 68417.m01846 protein kinase family protein contains ...    30   1.3  
At5g63190.2 68418.m07934 MA3 domain-containing protein low simil...    29   3.8  
At5g63190.1 68418.m07933 MA3 domain-containing protein low simil...    29   3.8  
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        29   3.8  
At4g11470.1 68417.m01845 protein kinase family protein contains ...    28   6.7  
At3g13065.1 68416.m01632 leucine-rich repeat transmembrane prote...    28   6.7  
At3g12240.1 68416.m01527 serine carboxypeptidase S10 family prot...    28   6.7  
At3g12230.1 68416.m01526 serine carboxypeptidase S10 family prot...    28   6.7  
At5g67380.1 68418.m08496 casein kinase II alpha chain 1 identica...    27   8.8  
At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identica...    27   8.8  

>At3g17940.1 68416.m02284 aldose 1-epimerase family protein similar
           to ALDOSE 1-EPIMERASE PRECURSOR GB:P05149 [SP|P05149]
           from [Acinetobacter calcoaceticus]; contains Pfam
           profile PF01263 Aldose 1-epimerase
          Length = 341

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 29/61 (47%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
 Frame = +2

Query: 341 KFSIDGTTYQLANNIGKDHLHGGINGFNKANW---NSTVDGTK--VIFSYLSKDGEEGYP 505
           KFS++G  Y L  N   + LHGG  GF+K  W       DG K  + F Y S DGEEGYP
Sbjct: 78  KFSLNGVNYTLPINKPPNSLHGGNKGFDKKIWEVAGHKRDGEKPFITFKYHSADGEEGYP 137

Query: 506 G 508
           G
Sbjct: 138 G 138



 Score = 36.3 bits (80), Expect = 0.019
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +3

Query: 252 GFDELDGYVNRNTPYLGTTVGRCANRI 332
           GFD +D YV    PY G  VGR ANRI
Sbjct: 48  GFDSVDPYVKGLAPYFGCIVGRVANRI 74



 Score = 35.1 bits (77), Expect = 0.044
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +1

Query: 172 VSVIXYGATIQSIQVPDKYGITSDVVLG 255
           V +  YG TI S+ VPDK G   DVVLG
Sbjct: 21  VKISNYGTTITSLSVPDKNGKLGDVVLG 48



 Score = 30.7 bits (66), Expect = 0.95
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 502 PGYLITNITYEVTDDNALYVDFXSXXXXXXXXXXXX-HSYFNLAGHDTG 645
           PG +    TY +T    + +D  +             H+Y+NLAGHD+G
Sbjct: 137 PGAVSVTATYTLTSATTMRLDMEAVPENKDTPINLAQHTYWNLAGHDSG 185


>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
           to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
           (Mutarotase) from Acinetobacter calcoaceticus; contains
           Pfam profile PF01263 Aldose 1-epimerase
          Length = 490

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
 Frame = +2

Query: 341 KFSIDGTTYQLANNIGKDHLHGGINGFNKANW---NSTVDGTK--VIFSYLSKDGEEGYP 505
           KF ++G  Y+ + N GK+ LHGG  GF    W       DG K  ++F++ S DG++G+P
Sbjct: 228 KFKLNGKEYKTSVNDGKNTLHGGKKGFGDVVWAVAKHQYDGKKPHIVFTHTSPDGDQGFP 287

Query: 506 G 508
           G
Sbjct: 288 G 288



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 502 PGYLITNITYEVTDDNALYVDFXSXXXXXXXXXXXXH-SYFNLAGHDTG 645
           PG L   +TY++  DN L V   +            H SY+NL GH++G
Sbjct: 287 PGELSVTVTYKLVKDNELSVVMEAKPKDKATPVNLAHHSYWNLGGHNSG 335



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 252 GFDELDGYVNRNTPYLGTTVGRCANRIG 335
           G+D +  Y   +  Y G TVGR ANRIG
Sbjct: 199 GYDSVKTY-KTDKVYFGATVGRVANRIG 225



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 169 SVSVIXYGATIQSIQVPDKYGITSDVVLG 255
           +V    +GA+I S+  PDK G   D+VLG
Sbjct: 171 TVKFTNWGASIISLHFPDKNGKMDDIVLG 199


>At3g47800.1 68416.m05207 aldose 1-epimerase family protein similar
           to ALDOSE 1-EPIMERASE PRECURSOR GB:P05149 [SP|P05149]
           from [Acinetobacter calcoaceticus]; contains Pfam
           profile PF01263 Aldose 1-epimerase
          Length = 358

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = +2

Query: 341 KFSIDGTTYQLANNIGKDHLHGGINGFNKANWN--STVDGTKVIFSYLSKDGEEGYPG 508
           KF ++G  Y+   N G++ LHGG  GF+   W+    V  + + F+Y S DGEEG+PG
Sbjct: 99  KFKLNGHLYKTDPNEGRNTLHGGSKGFSDVIWSVQKYVPTSHITFTYDSFDGEEGFPG 156



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = +3

Query: 252 GFDELDGYVNRNTPYLGTTVGRCANRIGG 338
           GFD +DGY N +T Y G  VGR ANRIGG
Sbjct: 70  GFDTVDGYKN-DTTYFGAIVGRVANRIGG 97



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 145 TWRASDG-FSVSVIXYGATIQSIQVPDKYGITSDVVLG 255
           T++ + G  SV+   YGA + S+ +PD++G   DVVLG
Sbjct: 33  TYKLTRGSLSVTFTNYGAVMTSLLLPDRHGKQDDVVLG 70


>At3g03880.1 68416.m00401 expressed protein 
          Length = 193

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 359 TTYQLANNIGKDHLHGGINGFNKANWNSTVDGTKVIFSYLSKDGEEGY 502
           TT  + +NIGKD L G ING +  N   ++   K+  +  +K+ EE +
Sbjct: 80  TTRGVVDNIGKDCLDGNINGEDSNNKEESM-WPKLFITLSNKEKEEDF 126


>At4g11480.1 68417.m01846 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 656

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -1

Query: 681 VYNKDMVVDLLDTSIVASQIKIRMVRQIYNGLLSCRRXKVDIQGI-VVGNFISNVSNKIP 505
           ++N D  +DL+D +I  S    +++R I+ GLL  +   VD   +  +   ++N S  +P
Sbjct: 550 LWNNDSPLDLIDPAIEESCDNDKVIRCIHIGLLCVQETPVDRPEMSTIFQMLTNSSITLP 609

Query: 504 GYPSSPSF 481
             P  P F
Sbjct: 610 -VPRPPGF 616


>At5g63190.2 68418.m07934 MA3 domain-containing protein low
           similarity to programmed cell death 4 protein [Gallus
           gallus] GI:12958564; contains Pfam profile PF02847: MA3
           domain
          Length = 702

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -3

Query: 433 IRLIKSINPAM*MIFP--NVVSELISRAVDAEFCPPILLAQRPTVVPK 296
           IRL++S++     I    NV++  I+RA+  E  PP+ L +   ++P+
Sbjct: 200 IRLLRSVDDLAVDILDAVNVLALFIARAIVDEILPPVFLVRSKKILPE 247


>At5g63190.1 68418.m07933 MA3 domain-containing protein low
           similarity to programmed cell death 4 protein [Gallus
           gallus] GI:12958564; contains Pfam profile PF02847: MA3
           domain
          Length = 702

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -3

Query: 433 IRLIKSINPAM*MIFP--NVVSELISRAVDAEFCPPILLAQRPTVVPK 296
           IRL++S++     I    NV++  I+RA+  E  PP+ L +   ++P+
Sbjct: 200 IRLLRSVDDLAVDILDAVNVLALFIARAIVDEILPPVFLVRSKKILPE 247


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 260 RTRRVREQKHTVLRDHGRPLCQQDRRTKFSID 355
           RT+   E+ H VL  HG PLC  D +  F+ D
Sbjct: 270 RTKSQTERVH-VLGSHGSPLCSIDLKDVFNFD 300


>At4g11470.1 68417.m01845 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 666

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 681 VYNKDMVVDLLDTSIVASQIKIRMVRQIYNGLLSCRRXKVDIQGI-VVGNFISNVSNKIP 505
           ++N D  +DL+D +I  S     ++R I+ G+L  +    D   +  +   ++N S  +P
Sbjct: 560 LWNNDSPLDLIDPAIKESYDNDEVIRCIHIGILCVQETPADRPEMSTIFQMLTNSSITLP 619

Query: 504 GYPSSPSF 481
             P  P F
Sbjct: 620 -VPRPPGF 626


>At3g13065.1 68416.m01632 leucine-rich repeat transmembrane protein
           kinase, putative leucine-rich repeat transmembrane
           protein kinase 1 GB:AAC27894 from [Zea mays]
          Length = 646

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 333 GGQNSASTARLINSLTTLGKIIYMAGLMDLIRR 431
           GG + A T  +I +++++G +I  AGL+ LI R
Sbjct: 228 GGSSKALTLGVIIAVSSIGGLILFAGLIALISR 260


>At3g12240.1 68416.m01527 serine carboxypeptidase S10 family protein
           contains Pfam profile: PF00450 serine carboxypeptidase;
           similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]
          Length = 436

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 612 MVRQIYNGLLSCRRXKVDIQGIVVGN 535
           +V++I NG   C + ++++QG V+GN
Sbjct: 188 IVQEISNGNYICCKPQINLQGYVIGN 213


>At3g12230.1 68416.m01526 serine carboxypeptidase S10 family protein
           contains Pfam profile: PF00450 serine carboxypeptidase;
           similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]
          Length = 435

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 612 MVRQIYNGLLSCRRXKVDIQGIVVGN 535
           +V++I NG   C + ++++QG V+GN
Sbjct: 187 IVQEISNGNYICCKPQINLQGYVIGN 212


>At5g67380.1 68418.m08496 casein kinase II alpha chain 1 identical
           to casein kinase II, alpha chain 1 (CK II) [Arabidopsis
           thaliana] SWISS-PROT:Q08467; contains protein kinase
           domain, Pfam:PF00069
          Length = 409

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 127 LHDAVRNPQHSKSPCLLFKTNDSSGHKTIKKTI 29
           L D VR+ QHSK+P L+F+  +S+  K +  T+
Sbjct: 168 LLDVVRD-QHSKTPSLIFEYVNSTDFKVLYPTL 199


>At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identical
           to casein kinase II, alpha chain 2 (CK II) [Arabidopsis
           thaliana] SWISS-PROT:Q08466
          Length = 403

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 127 LHDAVRNPQHSKSPCLLFKTNDSSGHKTIKKTI 29
           L D VR+ QHSK+P L+F+  +S+  K +  T+
Sbjct: 162 LLDVVRD-QHSKTPSLIFEYVNSTDFKVLYPTL 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,419,829
Number of Sequences: 28952
Number of extensions: 296795
Number of successful extensions: 826
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)