Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30035
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   150   2e-37
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   150   2e-37
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    29   0.70 
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   3.7  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   5.0  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   6.5  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  150 bits (363), Expect = 2e-37
 Identities = 66/83 (79%), Positives = 75/83 (90%)
 Frame = +3

Query: 3   IFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKXLVKXXGKDQFHIRMRLH 182
           IFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NK LVK  GKD FH+R+R H
Sbjct: 33  IFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAH 92

Query: 183 PFHVIRINKMLSCAGADRLQTGM 251
           PFHV+RINKMLSCAGADRLQTGM
Sbjct: 93  PFHVVRINKMLSCAGADRLQTGM 115



 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 40/82 (48%), Positives = 53/82 (64%)
 Frame = +2

Query: 257 AFGKPQGTVXRVRXGQPIMSVRSSDRWXAQVIEALRRAKFKFPGRQKXYVSXXWGXTKYX 436
           AFGKP G V RV  GQ +MSVR+ D   A  IEALRR ++KFPG+Q+  VS  WG ++Y 
Sbjct: 118 AFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYA 177

Query: 437 RDEFEKLREEGRLANDGXIVQY 502
           RDE+ + R  G +  DG   ++
Sbjct: 178 RDEYIEKRSRGEIIPDGCYAKF 199


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  150 bits (363), Expect = 2e-37
 Identities = 66/83 (79%), Positives = 75/83 (90%)
 Frame = +3

Query: 3   IFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKXLVKXXGKDQFHIRMRLH 182
           IFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NK LVK  GKD FH+R+R H
Sbjct: 33  IFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAH 92

Query: 183 PFHVIRINKMLSCAGADRLQTGM 251
           PFHV+RINKMLSCAGADRLQTGM
Sbjct: 93  PFHVVRINKMLSCAGADRLQTGM 115



 Score = 87.4 bits (207), Expect = 1e-18
 Identities = 40/82 (48%), Positives = 53/82 (64%)
 Frame = +2

Query: 257 AFGKPQGTVXRVRXGQPIMSVRSSDRWXAQVIEALRRAKFKFPGRQKXYVSXXWGXTKYX 436
           AFGKP G V RV  GQ +MSVR+ D   A  IEALRR ++KFPG+Q+  VS  WG ++Y 
Sbjct: 118 AFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYA 177

Query: 437 RDEFEKLREEGRLANDGXIVQY 502
           RDE+ + R  G +  DG   ++
Sbjct: 178 RDEYIEKRSRGEIIPDGCYAKF 199


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 428 KYXRDEFEKLREEGRLANDGXIVQYRPNMDLS 523
           K  RD  E++ +EG+    G + Q RPNMDLS
Sbjct: 15  KQDRDA-EEIEDEGKNIILGIVSQLRPNMDLS 45


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 22  RERPLTTFHCACTWCPTNMNS 84
           R RP +T H +CT+C   + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 18  KKRATVDDFPLCVHLVSDEYEQLSSEALEAG 110
           +KRA +D   LC+  +S + E ++  +LE+G
Sbjct: 64  EKRAALDTLRLCLKRISPDAELVAFGSLESG 94


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 9    DLGKKRATVDDFPLCVHLVSDEYEQL 86
            ++ KKRA  DD    + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,225
Number of Sequences: 5004
Number of extensions: 37415
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)