Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30035
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 132 2e-31
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 132 2e-31
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 127 8e-30
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.71
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372... 28 6.7
02_05_1272 + 35373843-35374031,35374343-35374490,35374586-353747... 28 6.7
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 132 bits (319), Expect = 2e-31
Identities = 59/83 (71%), Positives = 69/83 (83%)
Frame = +3
Query: 3 IFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKXLVKXXGKDQFHIRMRLH 182
I+D+G K+ VD+FP CVHLVS E E +SSEALEA RI CNK + K GKD FH+R+R+H
Sbjct: 33 IYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVH 92
Query: 183 PFHVIRINKMLSCAGADRLQTGM 251
PFHV+RINKMLSCAGADRLQTGM
Sbjct: 93 PFHVLRINKMLSCAGADRLQTGM 115
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/81 (55%), Positives = 54/81 (66%)
Frame = +2
Query: 257 AFGKPQGTVXRVRXGQPIMSVRSSDRWXAQVIEALRRAKFKFPGRQKXYVSXXWGXTKYX 436
AFGKPQGT RV GQ ++SVR + EALRRAKFKFPGRQK S WG TK+
Sbjct: 118 AFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFT 177
Query: 437 RDEFEKLREEGRLANDGXIVQ 499
R+E+ KL+ EGR+ +DG Q
Sbjct: 178 REEYVKLKAEGRIMSDGVNAQ 198
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 132 bits (319), Expect = 2e-31
Identities = 59/83 (71%), Positives = 69/83 (83%)
Frame = +3
Query: 3 IFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKXLVKXXGKDQFHIRMRLH 182
IFD+G+K+ + DDFPLCVHLVS E E +SSEALEA RI CNK + K GKD FH+R+ H
Sbjct: 340 IFDVGQKKRSADDFPLCVHLVSWEKENVSSEALEAARIACNKYMAKHAGKDAFHLRVCAH 399
Query: 183 PFHVIRINKMLSCAGADRLQTGM 251
P+HV+RINKMLSCAGADRLQTGM
Sbjct: 400 PYHVLRINKMLSCAGADRLQTGM 422
Score = 95.5 bits (227), Expect = 3e-20
Identities = 45/77 (58%), Positives = 53/77 (68%)
Frame = +2
Query: 257 AFGKPQGTVXRVRXGQPIMSVRSSDRWXAQVIEALRRAKFKFPGRQKXYVSXXWGXTKYX 436
AFGKP GT RVR GQ ++SVR D A EALRRAKFKFPGRQ+ S WG T++
Sbjct: 425 AFGKPTGTCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFK 484
Query: 437 RDEFEKLREEGRLANDG 487
RDE+ KL+ EGR+ DG
Sbjct: 485 RDEYLKLKSEGRIVPDG 501
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 127 bits (306), Expect = 8e-30
Identities = 57/83 (68%), Positives = 68/83 (81%)
Frame = +3
Query: 3 IFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKXLVKXXGKDQFHIRMRLH 182
I+D+G K+ VD+F CVHLVS E E ++SEALEA RI CNK + K GKD FH+R+R+H
Sbjct: 29 IYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVH 88
Query: 183 PFHVIRINKMLSCAGADRLQTGM 251
PFHV+RINKMLSCAGADRLQTGM
Sbjct: 89 PFHVLRINKMLSCAGADRLQTGM 111
Score = 92.7 bits (220), Expect = 2e-19
Identities = 44/77 (57%), Positives = 51/77 (66%)
Frame = +2
Query: 257 AFGKPQGTVXRVRXGQPIMSVRSSDRWXAQVIEALRRAKFKFPGRQKXYVSXXWGXTKYX 436
AFGKPQGT RV GQ ++SVR EALRRAKFKFPGRQK S WG TK+
Sbjct: 114 AFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFS 173
Query: 437 RDEFEKLREEGRLANDG 487
RDE+ +L+ EGR+ DG
Sbjct: 174 RDEYVRLKSEGRIMPDG 190
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 30 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKXLVKXXG 149
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>03_06_0371 +
33435936-33436472,33436554-33436741,33437146-33437245,
33437360-33437545,33438977-33439186,33439772-33439959,
33440083-33440341
Length = 555
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 453 SCVKRAASLMTAXLCSTARTWTSRRLEE 536
S V+RAA++ TA LC A W + +E+
Sbjct: 516 SVVRRAAAVSTAVLCFAASRWLASFIEK 543
>02_05_1272 +
35373843-35374031,35374343-35374490,35374586-35374704,
35374992-35375121,35375122-35375201
Length = 221
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +2
Query: 245 WDACAFGKPQGTVXRVRXGQPIMSVRSSDRWXAQVIEALRRAKFKFPGRQKXYVSXXW 418
W +C +G Q ++ + + +++EAL+ K PG K Y+S W
Sbjct: 132 WSSCTKSSNRGNFHPSSILQTSKPDKTRNSYPVEILEALQSCKQ--PGSNKPYISFPW 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,660,617
Number of Sequences: 37544
Number of extensions: 287244
Number of successful extensions: 729
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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