Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30035
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         71   7e-13
SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_56706| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.8  
SB_49549| Best HMM Match : RVT_1 (HMM E-Value=3.6e-11)                 27   9.0  
SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 34/47 (72%), Positives = 37/47 (78%)
 Frame = +2

Query: 257 AFGKPQGTVXRVRXGQPIMSVRSSDRWXAQVIEALRRAKFKFPGRQK 397
           AFGKPQGTV RV  GQ I+S+R+ D   A  IEALRRAKFKFPGRQK
Sbjct: 4   AFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = +1

Query: 148 ERISSISA*DFTLSTLSASIKCYHALELIGSRLGCVCVW 264
           +++  ++  D T+ST +  ++C + ++L+G RL    +W
Sbjct: 731 QKLRKLAGKDLTVSTENGQLECVNEVKLLGIRLDNSLIW 769


>SB_56706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -2

Query: 319 HGHDGLSXANTXYSTLRLAKRTRIPVWSLSAPAHDNILLMRITWKG*SLMR 167
           H H  LS     YS+L L + T   + SL    H ++ L+R T    SL R
Sbjct: 17  HTHSSLSLIRDTYSSLSLIRHTYSSL-SLIRHTHSSLFLIRHTHSSLSLTR 66


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/52 (21%), Positives = 24/52 (46%)
 Frame = +2

Query: 263  GKPQGTVXRVRXGQPIMSVRSSDRWXAQVIEALRRAKFKFPGRQKXYVSXXW 418
            G+P G+V  +      +++++  +W   + E++  A + FP       S  W
Sbjct: 1112 GRPSGSVEILGSRDSFVAIQNGRQWMLDIEESISIAFYVFPNNSLGNTSRNW 1163


>SB_49549| Best HMM Match : RVT_1 (HMM E-Value=3.6e-11)
          Length = 520

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +1

Query: 151 RISSISA*DFTLSTLSASIKCYHALELIGSRLGCVCVW 264
           ++ +++  D T+ST +  ++C + ++L+G RL     W
Sbjct: 472 KLRTLTGKDLTVSTENGQLECVNEVKLLGIRLDNSLTW 509


>SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +1

Query: 184 LSTLSASIKCYHALELIGSRLGCV--CVWQASGY--CXXCSHXTAH 309
           L+T+S  IK YH  E  G +  CV  C   A GY  C    H + H
Sbjct: 69  LNTVSTRIKRYHIKEQHGRKDVCVSTCSSNAYGYDVCNTLRHYSRH 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,526,784
Number of Sequences: 59808
Number of extensions: 320899
Number of successful extensions: 747
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)