Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30033
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   2.9  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   3.8  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    24   6.7  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    24   6.7  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    23   8.8  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    23   8.8  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    23   8.8  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    23   8.8  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    23   8.8  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = -1

Query: 293  ICYKMFTYNAKSSVATLNKAQKDAKFSNSYSQFLIALIYLDNQTDLRSMMKLV 135
            +C K++ Y A   +++L     D +  N         IYL +Q  L    +++
Sbjct: 1692 LCAKLYFYTAFECMSSLKSDSHDTEEYNDLMDVFQKKIYLASQLVLHGFQRVI 1744


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 21  IIKMKNRFHYCYPWR*CDFGLRH 89
           + K ++R +   PWR  DFG+ H
Sbjct: 387 MFKSRDRSYRDLPWRVADFGVLH 409


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 165 NRLEKHDETSVCMLLIFKSIIDNSKNGVTQNR 70
           NR EK+ E  + ++    S + NS N   +NR
Sbjct: 228 NREEKYFENQLHLVKASSSDVSNSSNSFPENR 259


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 147 HASQVCLVI*VYKCYQKL*IAVTKFGIFLCFI*RCYRTLCIICKHFIT 290
           +AS +   +  Y       +  +   +F  F   C RTL  IC+H  T
Sbjct: 317 NASSIIYTLMYYLIIAPTLLITSAICMFTIFFVPCARTLWAICRHLRT 364


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 111 SIIDNSKNGVTQNRIISKGNNNESGFS 31
           S+ D   NG+ +N  +S   NN   F+
Sbjct: 552 SMDDKMANGILENAFMSTTQNNNESFA 578


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 111 SIIDNSKNGVTQNRIISKGNNNESGFS 31
           S+ D   NG+ +N  +S   NN   F+
Sbjct: 552 SMDDKMANGILENAFMSTTQNNNESFA 578


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -1

Query: 293  ICYKMFTYNAKSSVATLNKAQKDAKFSNSYSQFLIALIYLDNQTDLRSMMKL 138
            IC++   Y+AK    +  K ++D KF+     + + +  L N+  L  +  L
Sbjct: 1114 ICHEW--YHAKCLKMSKKKLRQDEKFTCPICDYRVEIPRLSNRPKLEDLQSL 1163


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 103 NYTFKYQ*HTNTSFIMLLKSVWLSRYISAIKN 198
           NY F+ Q  T  + I+   + WLSR +  + +
Sbjct: 187 NYEFELQKLTQKNSILENNNTWLSRELQGVND 218


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 275 TYNAKSSVATLNKAQKDAKFSNSYSQFLIALIYLDNQTDL 156
           T + K S+  L K   D KF+++     +AL+YL    +L
Sbjct: 634 TISYKVSIIYLEKLLLDNKFNDTVFPTRLALLYLKRILEL 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,287,840
Number of Sequences: 5004
Number of extensions: 22935
Number of successful extensions: 41
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)