Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30033
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1086 - 9930311-9931993 27 2.6
05_03_0216 + 10370531-10371922,10378656-10378808 27 2.6
12_02_0277 + 16682836-16684368 26 8.0
12_02_0275 + 16662206-16663738 26 8.0
10_01_0300 - 3257584-3258825 26 8.0
08_02_0235 + 14627648-14628889 26 8.0
08_01_0732 - 6672839-6672937,6672990-6673571,6673755-6674417 26 8.0
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 26 8.0
07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574... 26 8.0
07_01_1081 + 9831606-9832499 26 8.0
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 26 8.0
03_05_0186 + 21731294-21732277 26 8.0
>07_01_1086 - 9930311-9931993
Length = 560
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 5 VCKRTNYKNEKPLSLLLPLEI 67
VC+R +++KP SLL PL+I
Sbjct: 174 VCQRVKAEHQKPASLLQPLKI 194
>05_03_0216 + 10370531-10371922,10378656-10378808
Length = 514
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 5 VCKRTNYKNEKPLSLLLPLEI 67
VC+R +++KP SLL PL+I
Sbjct: 160 VCQRVKAEHQKPASLLQPLKI 180
>12_02_0277 + 16682836-16684368
Length = 510
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 168 PNRLEKHDETSVCMLLIFKSIIDNSKNGVTQNRIISK 58
P R++KH E S C L FK ++ S +T++ + +
Sbjct: 383 PGRMDKHIEMSYCRLDAFK-VLAKSYLDITEHSLFGE 418
>12_02_0275 + 16662206-16663738
Length = 510
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 168 PNRLEKHDETSVCMLLIFKSIIDNSKNGVTQNRIISK 58
P R++KH E S C L FK ++ S +T++ + +
Sbjct: 383 PGRMDKHIEMSYCRLDAFK-VLAKSYLDITEHSLFGE 418
>10_01_0300 - 3257584-3258825
Length = 413
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 5 VCKRTNYKNEKPLSLLLPLEI 67
VC+R +++KP LL PL+I
Sbjct: 27 VCQRVKAEHQKPAGLLQPLKI 47
>08_02_0235 + 14627648-14628889
Length = 413
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 5 VCKRTNYKNEKPLSLLLPLEI 67
VC+R +++KP LL PL+I
Sbjct: 27 VCQRVKAEHQKPAGLLQPLKI 47
>08_01_0732 - 6672839-6672937,6672990-6673571,6673755-6674417
Length = 447
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 5 VCKRTNYKNEKPLSLLLPLEI 67
VC+R +++KP LL PL+I
Sbjct: 160 VCQRVKAEHQKPAGLLQPLKI 180
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 5 VCKRTNYKNEKPLSLLLPLEI 67
VC+R +++KP LL PL+I
Sbjct: 1391 VCQRVKAEHQKPAGLLQPLKI 1411
>07_01_1133 -
10550799-10551137,10552195-10552254,10555693-10557401,
10557534-10557616,10577533-10578074
Length = 910
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 5 VCKRTNYKNEKPLSLLLPLEI 67
VC+R +++KP LL PL+I
Sbjct: 446 VCQRVKAEHQKPAGLLQPLKI 466
>07_01_1081 + 9831606-9832499
Length = 297
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 5 VCKRTNYKNEKPLSLLLPLEI 67
VC+R +++KP LL PL+I
Sbjct: 79 VCQRVKAEHQKPAGLLQPLKI 99
>04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 5 VCKRTNYKNEKPLSLLLPLEI 67
VC+R +++KP LL PL+I
Sbjct: 1053 VCQRVKAEHQKPAGLLQPLKI 1073
>03_05_0186 + 21731294-21732277
Length = 327
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 5 VCKRTNYKNEKPLSLLLPLEI 67
VC+R +++KP LL PL+I
Sbjct: 27 VCQRVKAEHQKPAGLLQPLKI 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,014,710
Number of Sequences: 37544
Number of extensions: 109771
Number of successful extensions: 236
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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