Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30033
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h at...    28   1.8  
AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein...    28   1.8  
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    27   2.4  
Z83218-7|CAB05685.2|  283|Caenorhabditis elegans Hypothetical pr...    26   5.6  
Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical pr...    26   7.4  

>AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h
           atpase protein 11, isoforma protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 210 QLFTIFDSTYIPR*PNRLEKHDETSVCMLLIFKSIIDNSKNGVTQNRII 64
           Q +    S  +P     L +  E ++  + +FK +ID  KN   +N+ I
Sbjct: 201 QKYATLSSMVVPGSSKLLTEEGEHALYTVTLFKKVIDEFKNTARENKFI 249


>AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein
           protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 210 QLFTIFDSTYIPR*PNRLEKHDETSVCMLLIFKSIIDNSKNGVTQNRII 64
           Q +    S  +P     L +  E ++  + +FK +ID  KN   +N+ I
Sbjct: 201 QKYATLSSMVVPGSSKLLTEEGEHALYTVTLFKKVIDEFKNTARENKFI 249


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 43  FIIVTLGDNAILGYAILRVV--NYTFKYQ*HTNTSFIMLLKSV 165
           F I+  G +  L + IL ++   Y FK   H N  F+M+L  V
Sbjct: 18  FAIIFQGTSGYLTFPILFIILKKYAFKVYYHPNLVFLMMLNVV 60


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 43  FIIVTLGDNAILGYAILRVV--NYTFKYQ*HTNTSFIMLLKSV 165
           F I+  G +  L + IL ++   Y FK   H N  F+M+L  V
Sbjct: 18  FAIIFQGTSGYLTFPILFIILKKYAFKVYYHPNLVFLMMLNVV 60


>Z83218-7|CAB05685.2|  283|Caenorhabditis elegans Hypothetical
           protein C31A11.3 protein.
          Length = 283

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 211 LLNLASFCALFNVATELFALYVNIL*QIHYNFLK 312
           +L++  FC LF V   +FA ++NI+      +LK
Sbjct: 1   MLSIYGFCNLFAVFFAMFACFLNIILLFSILYLK 34


>Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical
           protein T20D3.8 protein.
          Length = 282

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 149 CFSSLFGYLGI*VLSKIVNSCY*IWHLFVLYL 244
           CF SLF    I   S  ++ C+ + H+F+L++
Sbjct: 222 CFLSLFSIYCISDFSLELSICFALLHIFILFI 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,973,735
Number of Sequences: 27780
Number of extensions: 123561
Number of successful extensions: 260
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)